Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G14-1
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62902|RL31_RAT 60S ribosomal protein L31 >gi|51702808|s... 121 4e-28
sp|Q90YT7|RL31_ICTPU 60S ribosomal protein L31 118 4e-27
sp|Q6NUH0|RL31_XENLA 60S ribosomal protein L31 116 1e-26
sp|Q9IA76|RL31_PAROL 60S ribosomal protein L31 116 1e-26
sp|Q7KF90|RL31_SPOFR 60S ribosomal protein L31 >gi|51701841... 113 2e-25
sp|Q9XGL4|RL31_CYAPA 60S ribosomal protein L31 113 2e-25
sp|Q9U332|RL31_CAEEL 60S ribosomal protein L31 112 2e-25
sp|Q9V597|RL31_DROME 60S ribosomal protein L31 110 1e-24
sp|Q9GN74|RL31_AEDAE 60S ribosomal protein L31 108 3e-24
sp|O18602|RL31_DROVI 60S ribosomal protein L31 105 4e-23
>sp|P62902|RL31_RAT 60S ribosomal protein L31
sp|P62900|RL31_MOUSE 60S ribosomal protein L31
sp|P62899|RL31_HUMAN 60S ribosomal protein L31
sp|P62901|RL31_PIG 60S ribosomal protein L31
Length = 125
Score = 121 bits (304), Expect = 4e-28
Identities = 56/76 (73%), Positives = 66/76 (86%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA K+MGT DVR+D RLNK VW KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVT
Sbjct: 48 EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVT 107
Query: 75 YVPCTDFKDKGTVNVE 28
YVP T FK+ TVNV+
Sbjct: 108 YVPVTTFKNLQTVNVD 123
>sp|Q90YT7|RL31_ICTPU 60S ribosomal protein L31
Length = 125
Score = 118 bits (296), Expect = 4e-27
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA K+MGT DVR+D RLNK VW KG+RNVPY++RVRL+RK+NEDEDSP+K YTLVT
Sbjct: 48 EIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVT 107
Query: 75 YVPCTDFKDKGTVNVE 28
YVP T +K TVNV+
Sbjct: 108 YVPVTTYKGLQTVNVD 123
>sp|Q6NUH0|RL31_XENLA 60S ribosomal protein L31
Length = 125
Score = 116 bits (291), Expect = 1e-26
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA K+M T DVR+D RLNK VW KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVT
Sbjct: 48 EIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVT 107
Query: 75 YVPCTDFKDKGTVNVE 28
YVP T++K TVNV+
Sbjct: 108 YVPVTNYKGLQTVNVD 123
>sp|Q9IA76|RL31_PAROL 60S ribosomal protein L31
Length = 124
Score = 116 bits (291), Expect = 1e-26
Identities = 54/76 (71%), Positives = 64/76 (84%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA K+MGT DVR+D RLNK VW KG+RNVPY++RVRL+RK+NEDEDSP+K YTLVT
Sbjct: 47 EIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVT 106
Query: 75 YVPCTDFKDKGTVNVE 28
YVP T K TVNV+
Sbjct: 107 YVPVTTCKGLQTVNVD 122
>sp|Q7KF90|RL31_SPOFR 60S ribosomal protein L31
sp|Q9GP16|RL31_HELVI 60S ribosomal protein L31
Length = 124
Score = 113 bits (282), Expect = 2e-25
Identities = 51/76 (67%), Positives = 63/76 (82%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA+KQMGT DVRVD RLNKF+W KG+RNVP++VRVRL+R++N+DEDS HK +TLVT
Sbjct: 45 EIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVT 104
Query: 75 YVPCTDFKDKGTVNVE 28
YVP K T NV+
Sbjct: 105 YVPVASIKGLQTENVD 120
>sp|Q9XGL4|RL31_CYAPA 60S ribosomal protein L31
Length = 119
Score = 113 bits (282), Expect = 2e-25
Identities = 55/76 (72%), Positives = 62/76 (81%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EIKKFA K MGT DVRVD RLNKFVW +GIR+VPY+VRVRLARK+N+DED+ K YTLVT
Sbjct: 42 EIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVT 101
Query: 75 YVPCTDFKDKGTVNVE 28
YVP T FK T NV+
Sbjct: 102 YVPVTSFKGLQTQNVD 117
>sp|Q9U332|RL31_CAEEL 60S ribosomal protein L31
Length = 122
Score = 112 bits (281), Expect = 2e-25
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EIKKFA+ QM T DVRVD +LNKF+W KGI+NVPY+VRVRL+R++NEDEDS K YTL T
Sbjct: 44 EIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCT 103
Query: 75 YVPCTDFKDKGTVNVE 28
YVPCT+F VNV+
Sbjct: 104 YVPCTNFHGLTNVNVD 119
>sp|Q9V597|RL31_DROME 60S ribosomal protein L31
Length = 124
Score = 110 bits (275), Expect = 1e-24
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVT 76
EI+KFA+++MGT DVR+D RLNK +W KGIR+ P+++RVRLAR++N+DEDSP+K YT VT
Sbjct: 45 EIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVT 104
Query: 75 YVPCTDFKDKGTVNVE 28
YVP + FK+ T NVE
Sbjct: 105 YVPVSTFKNLQTENVE 120
>sp|Q9GN74|RL31_AEDAE 60S ribosomal protein L31
Length = 124
Score = 108 bits (271), Expect = 3e-24
Identities = 47/75 (62%), Positives = 64/75 (85%)
Frame = -3
Query: 252 IKKFAQKQMGTEDVRVDVRLNKFVWGKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTY 73
++KFA+K+MGT DVR+D RLNK +W +GIRN P+++RVRL+R++N+DEDSP+K YTLVTY
Sbjct: 46 VRKFAEKEMGTNDVRIDTRLNKALWHRGIRNPPFRIRVRLSRRRNDDEDSPNKLYTLVTY 105
Query: 72 VPCTDFKDKGTVNVE 28
VP + FK+ T NVE
Sbjct: 106 VPVSTFKELQTENVE 120
>sp|O18602|RL31_DROVI 60S ribosomal protein L31
Length = 128
Score = 105 bits (261), Expect = 4e-23
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 4/80 (5%)
Frame = -3
Query: 255 EIKKFAQKQMGTEDVRVDVRLNKFVWGKGI----RNVPYKVRVRLARKKNEDEDSPHKTY 88
EI+KF +++MGT DVR+D RLNK +W KGI R+ P++VRVRLAR++N+DEDSP+K Y
Sbjct: 45 EIRKFTEREMGTNDVRIDTRLNKHIWSKGISLRYRSTPFRVRVRLARRRNDDEDSPNKLY 104
Query: 87 TLVTYVPCTDFKDKGTVNVE 28
TLVTYVP FK+ T NVE
Sbjct: 105 TLVTYVPVPTFKNLQTENVE 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,382,176
Number of Sequences: 369166
Number of extensions: 532341
Number of successful extensions: 1428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)