Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G07
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PJM5|RL24_CHLMU 50S ribosomal protein L24 34 0.46
sp|P28537|RL24_CHLTR 50S ribosomal protein L24 32 2.3
sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chro... 32 3.0
sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2... 31 5.1
sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW 31 5.1
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 30 6.7
sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor 30 6.7
sp|Q7TPH6|MYCB2_MOUSE Probable ubiquitin ligase protein MYC... 30 8.7
sp|O75592|MYCB2_HUMAN Probable ubiquitin ligase protein MYC... 30 8.7
>sp|Q9PJM5|RL24_CHLMU 50S ribosomal protein L24
Length = 111
Score = 34.3 bits (77), Expect = 0.46
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 33 LCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIID--KNCFMSKDIGEKTWEVNLLYSI 206
+C+G+T+ +A N G + +K+ + +GI KN S++ K +N+ +
Sbjct: 6 VCVGDTVYVLAGNDKGKQGKVLRCLKDKVVVEGINVRVKNIKRSQE-NPKGKRINIEAPL 64
Query: 207 HVTELELYSDNDPSELRISITSQTKK 284
H++ + L DN P+ L + +T + ++
Sbjct: 65 HISNVRLSIDNQPARLFVKVTEKGRE 90
>sp|P28537|RL24_CHLTR 50S ribosomal protein L24
Length = 111
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +3
Query: 33 LCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIID--KNCFMSKDIGEKTWEVNLLYSI 206
+C+G+T+ +A N G + +K+ + +GI KN S++ K +N+ +
Sbjct: 6 VCVGDTVYVLAGNDKGKQGKVLRCLKDKVVVEGINVRVKNIKRSQE-NPKGKRINIEAPL 64
Query: 207 HVTELELYSDNDPSELRISITSQTKK 284
H++ + L DN P+ L + + + ++
Sbjct: 65 HISNVRLSIDNQPARLFVKVREKGRE 90
>sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chromosome I
Length = 1888
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 735 FSLEQFIFLTTNKLKSNNELIVNILPYFFKKKLISLSFLEDSKYIW*LESELK*GKVE*T 556
F+++ +F T KLK E ++ LPYF + + L L + L S++ G V
Sbjct: 717 FNIQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLA 776
Query: 555 NSF 547
+SF
Sbjct: 777 SSF 779
>sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2 protein) (Alpha-2 repressor)
Length = 210
Score = 30.8 bits (68), Expect = 5.1
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 265 IEIRNSLGSLSEYNSNSVTWIEYSKL---TSQVFSPISLLIKQFLSIIPSFANVSL 107
+E+R+ LG LS N N E KL TSQ+ + I++L+K+ SI +N L
Sbjct: 49 VELRDILGFLSRANKNRKISDEEKKLLQTTSQLTTTITVLLKEMRSIENDRSNYQL 104
>sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW
Length = 317
Score = 30.8 bits (68), Expect = 5.1
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3
Query: 24 LVELCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTWEVNLLYS 203
L++ + +V + KN YG IKD + +A K F K++ T EV L
Sbjct: 146 LIQNSTVSELVKIMKN----YGEIKDPYRVVVAL-----KKAFEKKELN--TLEVVELIK 194
Query: 204 IHVTELELYSDNDPSE-----LRISITSQ 275
HV + ELY++ P+ LRI++ ++
Sbjct: 195 KHVNKAELYANKHPARRYFQALRIAVNNE 223
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 30.4 bits (67), Expect = 6.7
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +3
Query: 75 PVIYGSIKDGIKETLANDGIIDKNCFMSKDIG------EKTWE---VNLLYSIHVTELEL 227
P I GSI DGI+ L + G++ + ++ K + + WE +N+ H+T +L
Sbjct: 90 PGIMGSIFDGIQRPLRDIGVMTNSIYIPKGVNTTALSRSEMWEFNPLNVRVGSHITGGDL 149
Query: 228 YS---DNDPSELRISITSQTKKT 287
Y +N + R+ + + K T
Sbjct: 150 YGVVHENTLVKQRMIVAPRAKGT 172
>sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor
Length = 381
Score = 30.4 bits (67), Expect = 6.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 201 SIHVTELELYSDNDPSELRISITSQTKKTKFPVAAKSCANGCKIPIKKDAE 353
S H+ +ELY DN + + + ++T+ +P+ C + C P++K AE
Sbjct: 311 SCHI--MELYQDNGGTFVEMYYRNETQNEPYPLTLPGCTHSC--PLEKFAE 357
>sp|Q7TPH6|MYCB2_MOUSE Probable ubiquitin ligase protein MYCBP2 (Myc binding protein 2)
(Protein associated with Myc) (Pam/highwire/rpm-1
protein)
Length = 4711
Score = 30.0 bits (66), Expect = 8.7
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 21 ILVELCLGN--TIVNV-AKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTWEVN 191
+ + +CL + +IV++ ++P + GS+ DG ET G DKN K +N
Sbjct: 3766 LCIVMCLKDLTSIVDIKTSSRPAMIGSLTDGSTETFWESGDEDKN-------KTKNITIN 3818
Query: 192 LLYSIHVTELELYSDNDPSELRISITSQT 278
+ I+ + ++ DN +L +TS T
Sbjct: 3819 CVKGINARYVSVHVDNS-RDLGNKVTSMT 3846
>sp|O75592|MYCB2_HUMAN Probable ubiquitin ligase protein MYCBP2 (Myc binding protein 2)
(Protein associated with Myc) (Pam/highwire/rpm-1
protein)
Length = 4641
Score = 30.0 bits (66), Expect = 8.7
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 21 ILVELCLGN--TIVNV-AKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTWEVN 191
+ + +CL + +IV++ ++P + GS+ DG ET G DKN K +N
Sbjct: 3696 LCIVMCLKDLTSIVDIKTSSRPAMIGSLTDGSTETFWESGDEDKN-------KTKNITIN 3748
Query: 192 LLYSIHVTELELYSDNDPSELRISITSQT 278
+ I+ + ++ DN +L +TS T
Sbjct: 3749 CVKGINARYVSVHVDNS-RDLGNKVTSMT 3776
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,394,699
Number of Sequences: 369166
Number of extensions: 1317471
Number of successful extensions: 3611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3607
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)