Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G06
(955 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 458 e-128
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 456 e-128
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 455 e-127
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 454 e-127
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 454 e-127
sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6) 454 e-127
sp|P52273|TBA_BOMMO Tubulin alpha chain 454 e-127
sp|P30436|TBA_ONCKE Tubulin alpha chain 453 e-127
sp|P08537|TBA_XENLA Tubulin alpha chain 453 e-127
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 453 e-127
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 458 bits (1178), Expect = e-128
Identities = 219/321 (68%), Positives = 260/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT +DEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG I+DL LDR+RKLAD C LQGF IFHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E VYPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL+T+ P+ISAEKAYHE L+ +IT +CFEPAN VKVDPR GKYMA CMLYRGDV
Sbjct: 264 RIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 456 bits (1172), Expect = e-128
Identities = 217/321 (67%), Positives = 259/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT +DEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG I+DL LDR+RKLAD C LQGF IFHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL+T+ P+ISAEKAYHE L+ +IT +CFEPAN VK DPR GKYMA CMLYRGDV
Sbjct: 264 RIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 455 bits (1170), Expect = e-127
Identities = 215/321 (66%), Positives = 263/321 (81%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLA---RYSAMTDSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PD + ++D SF TFF+ETGAGK VPR +F+DLEP+ +DEVR+GVY
Sbjct: 24 YCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG I+D+ LDR+RKLAD C LQGF IFHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E VYPAP ++TAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RPSYTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL+T+ P+ISAEKAYHE L+ +IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 264 RIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIANIK RTIQ+V
Sbjct: 324 VPKDVNAAIANIKTKRTIQFV 344
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 454 bits (1169), Expect = e-127
Identities = 218/321 (67%), Positives = 259/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT IDEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG IIDL LDR+RKLAD C LQGF +FHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR+++Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE LT +IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 264 RIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 454 bits (1169), Expect = e-127
Identities = 218/321 (67%), Positives = 259/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT IDEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG IIDL LDR+RKLAD C LQGF +FHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR+++Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE LT +IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 264 RIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 454 bits (1169), Expect = e-127
Identities = 218/321 (67%), Positives = 259/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT IDEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG IIDL LDR+RKLAD C LQGF +FHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR+++Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE LT +IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 264 RIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 454 bits (1167), Expect = e-127
Identities = 217/321 (67%), Positives = 258/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR LF+DLEPT +DEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRALFVDLEPTVVDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG I+DL LDR+RKLAD C LQGF IFHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+ P+YTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL+T+ P+ISAEKAYHE L+ +IT +CFEPAN VK DPR GKYMA CMLYRGDV
Sbjct: 264 RIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 453 bits (1165), Expect = e-127
Identities = 219/321 (68%), Positives = 258/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLA---RYSAMTDSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG + D SF TFF+ETGAGK VPR +F+DLEPT IDEVRTG+Y
Sbjct: 18 YCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIY 77
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG IID+ LDR RKLAD C LQGF IFHSFGG
Sbjct: 78 RQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGG 137
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E VYPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 138 GTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 197
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RPSYTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 198 VDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 257
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE L+ IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 258 RIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 317
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P NSAIA IK R+IQ+V
Sbjct: 318 VPKDVNSAIAAIKTKRSIQFV 338
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 453 bits (1165), Expect = e-127
Identities = 217/321 (67%), Positives = 258/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT IDEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++TIG IIDL LDR+RKLAD C LQGF +FHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG T+L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR+++Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE LT IT +CFEPAN VK DPR GKYMA C+LYRGDV
Sbjct: 264 RIHFPLATYAPVISAEKAYHEQLTVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK R+IQ+V
Sbjct: 324 VPKDVNAAIATIKTKRSIQFV 344
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 453 bits (1165), Expect = e-127
Identities = 216/321 (67%), Positives = 258/321 (80%), Gaps = 3/321 (0%)
Frame = +1
Query: 1 FCIEHGIGPDGLARYSAMT---DSSFKTFFNETGAGKFVPRCLFLDLEPTPIDEVRTGVY 171
+C+EHGI PDG D SF TFF+ETGAGK VPR +F+DLEPT +DEVRTG Y
Sbjct: 24 YCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83
Query: 172 RLLFHPEQLMSGKEDAANNYARGYFTIGAGIIDLALDRVRKLADDCRMLQGFFIFHSFGG 351
R LFHPEQL++GKEDAANNYARG++T+G IIDL LDR+RKLAD C LQGF IFHSFGG
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGG 143
Query: 352 GTGSGLTALVIQRISQDYGKKPKIEMCVYPAPCLSTAVVEPYNSILTTHACIEDSDVTFL 531
GTGSG ++L+++R+S DYGKK K+E +YPAP +STAVVEPYNSILTTH +E SD F+
Sbjct: 144 GTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFM 203
Query: 532 MDNEAVWDICIRNLNIQRPSYTNINRILAQCISSITASLRFEGSLTGDLISLQTNLVPYP 711
+DNEA++DIC RNL+I+RP+YTN+NR++ Q +SSITASLRF+G+L DL QTNLVPYP
Sbjct: 204 VDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYP 263
Query: 712 RIHFPLITFNPIISAEKAYHETLTTEQITRSCFEPANSFVKVDPRRGKYMAVCMLYRGDV 891
RIHFPL T+ P+ISAEKAYHE LT +IT +CFEPAN VK DPR GKYM+ CMLYRGDV
Sbjct: 264 RIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDV 323
Query: 892 DPNASNSAIANIKRTRTIQWV 954
P N+AIA IK RTIQ+V
Sbjct: 324 VPKDVNAAIATIKTKRTIQFV 344
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,492,080
Number of Sequences: 369166
Number of extensions: 2128641
Number of successful extensions: 5878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5618
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)