Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F23
(439 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 37 0.014
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 36 0.041
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 35 0.054
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 35 0.071
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 34 0.16
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 33 0.21
sp|Q7ZZN8|CRVP2_NAJAT Natrin-2 precursor (Cysteine-rich ven... 33 0.21
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 33 0.35
sp|P04284|PR06_LYCES Pathogenesis-related leaf protein 6 pr... 32 0.46
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 32 0.60
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 37.4 bits (85), Expect = 0.014
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 TKLCGFGRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 119
TK G G+A S+G+ +V +Y P GN + G F+EN+L P
Sbjct: 112 TKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 35.8 bits (81), Expect = 0.041
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G R +C+NG +I+ Y PPGN +GK
Sbjct: 139 GCARVQCNNGGYIVSCNYDPPGNVIGK 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 35.4 bits (80), Expect = 0.054
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G R KC+NG +++ Y PPGN +G+
Sbjct: 139 GCARVKCNNGGYVVSCNYDPPGNVIGQ 165
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 35.0 bits (79), Expect = 0.071
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 TKLCGFGRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 119
TK G G+A S+G+ +V +Y P GN + G F+EN+ P
Sbjct: 112 TKKIGVGKASASDGSSFVVARYFPAGNIVNQGFFEENVPPP 152
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 33.9 bits (76), Expect = 0.16
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G R +C+NG +++ Y PPGN+ G+
Sbjct: 139 GCARVQCNNGGYVVSCNYDPPGNYRGE 165
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 33.5 bits (75), Expect = 0.21
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G R +C+NG + I Y PPGN+ G+
Sbjct: 138 GCARVRCNNGAWFITCNYSPPGNYAGQ 164
>sp|Q7ZZN8|CRVP2_NAJAT Natrin-2 precursor (Cysteine-rich venom protein 2) (NA-CRVP2)
(Protein G2b)
Length = 238
Score = 33.5 bits (75), Expect = 0.21
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 9 LCGFGRAKCSNGNFIIVGQYKPPGNFLG 92
L G G AKCS+ ++ V QY P GN +G
Sbjct: 145 LLGCGAAKCSSSKYLYVCQYCPTGNIIG 172
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 32.7 bits (73), Expect = 0.35
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G R + +NG F I Y PPGNF+G+
Sbjct: 130 GCARVRSNNGWFFITCNYDPPGNFIGQ 156
>sp|P04284|PR06_LYCES Pathogenesis-related leaf protein 6 precursor (P6)
(Ethylene-induced protein P1) (P14) (P14A) (PR protein)
Length = 159
Score = 32.3 bits (72), Expect = 0.46
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 15 GFGRAKCSNGNFIIVGQYKPPGNFLGK 95
G GRA+C+NG + I Y P GN++G+
Sbjct: 130 GCGRARCNNGWWFISCNYDPVGNWIGQ 156
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 32.0 bits (71), Expect = 0.60
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 12 CGFGRAKCSNGNFIIVGQYKPPGNFLGKFKENI 110
CG+ + N+I+ Y PPGN+LG+F E +
Sbjct: 127 CGYKYCGTTWNNYIVCS-YNPPGNYLGEFAEEV 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,372,342
Number of Sequences: 369166
Number of extensions: 771808
Number of successful extensions: 2225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)