Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F20
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29408|PGK1_MACEU Phosphoglycerate kinase 1 90 7e-18
sp|Q8MIF7|PGK2_HORSE Phosphoglycerate kinase, testis specific 89 2e-17
sp|P50310|PGK1_CRIGR Phosphoglycerate kinase 1 88 3e-17
sp|P16617|PGK1_RAT Phosphoglycerate kinase 1 88 3e-17
sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 (Primer reco... 88 3e-17
sp|Q7SIB7|PGK1_PIG Phosphoglycerate kinase 1 88 3e-17
sp|Q60HD8|PGK1_MACFA Phosphoglycerate kinase 1 88 3e-17
sp|P09411|PGK1_MOUSE Phosphoglycerate kinase 1 88 3e-17
sp|P00559|PGK1_HORSE Phosphoglycerate kinase 1 88 3e-17
sp|P07205|PGK2_HUMAN Phosphoglycerate kinase, testis specific 88 4e-17
>sp|P29408|PGK1_MACEU Phosphoglycerate kinase 1
Length = 417
Score = 90.1 bits (222), Expect = 7e-18
Identities = 41/51 (80%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ LNN
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVSTLNN 416
>sp|Q8MIF7|PGK2_HORSE Phosphoglycerate kinase, testis specific
Length = 417
Score = 88.6 bits (218), Expect = 2e-17
Identities = 41/51 (80%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGKILPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVDALSN 416
>sp|P50310|PGK1_CRIGR Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|P16617|PGK1_RAT Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 (Primer recognition protein 2) (PRP 2)
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|Q7SIB7|PGK1_PIG Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|Q60HD8|PGK1_MACFA Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|P09411|PGK1_MOUSE Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|P00559|PGK1_HORSE Phosphoglycerate kinase 1
Length = 417
Score = 88.2 bits (217), Expect = 3e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +TIIGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGK+LPGV+ L+N
Sbjct: 366 GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
>sp|P07205|PGK2_HUMAN Phosphoglycerate kinase, testis specific
Length = 417
Score = 87.8 bits (216), Expect = 4e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 1 GAVTIIGGGDTASCCAKFNSEHLVSHVSTGGGASLELLEGKILPGVNVLNN 153
G +T+IGGGDTA+CCAK+N+E VSHVSTGGGASLELLEGKILPGV L+N
Sbjct: 366 GCITVIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVEALSN 416
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,025,437
Number of Sequences: 369166
Number of extensions: 2157522
Number of successful extensions: 6283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6258
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)