Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F19
(870 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GP32|ALF_ECHMU Fructose-bisphosphate aldolase 417 e-116
sp|P53442|ALF_SCHMA Fructose-bisphosphate aldolase 403 e-112
sp|Q9GKW3|ALDOC_MACFA Fructose-bisphosphate aldolase C (Bra... 379 e-105
sp|P07764|ALF_DROME Fructose-bisphosphate aldolase 379 e-105
sp|P09972|ALDOC_HUMAN Fructose-bisphosphate aldolase C (Bra... 378 e-104
sp|P05063|ALDOC_MOUSE Fructose-bisphosphate aldolase C (Bra... 377 e-104
sp|P53446|ALF2_LAMJA Fructose-bisphosphate aldolase, non-mu... 375 e-103
sp|P09117|ALDOC_RAT Fructose-bisphosphate aldolase C (Brain... 375 e-103
sp|Q5R1X4|ALDOC_PANTR Fructose-bisphosphate aldolase C (Bra... 375 e-103
sp|P05065|ALDOA_RAT Fructose-bisphosphate aldolase A (Muscl... 370 e-102
>sp|Q9GP32|ALF_ECHMU Fructose-bisphosphate aldolase
Length = 363
Score = 417 bits (1071), Expect = e-116
Identities = 203/285 (71%), Positives = 234/285 (82%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
M F YL ++KEL++ A+AIV+PGKG+LAADEST T+GKRF I+L+NTE NRR YR
Sbjct: 1 MSRFVPYLCAEKMKELRENASAIVAPGKGLLAADESTNTIGKRFAAINLENTEENRRAYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
+LLF TDP A++ISGVIL+HET++QK DG+P V+ L++RG++PGIKVD G VPL GT
Sbjct: 61 ELLFTTDPEFAKHISGVILFHETVYQKTKDGKPFVELLRERGVLPGIKVDLGVVPLGGTA 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
DECTTQGLD L +RCA Y DGC FAKWRCVLKI H PSYLAM+ENANVLARYA ICQ+
Sbjct: 121 DECTTQGLDNLAQRCAQYYNDGCRFAKWRCVLKISSHNPSYLAMLENANVLARYAFICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NGLVPIVEPEVLPDG HDL TAQRVTE VL+FVYKALADHH+YLEGTLLKPNMVT G
Sbjct: 181 NGLVPIVEPEVLPDGDHDLETAQRVTEQVLSFVYKALADHHVYLEGTLLKPNMVTCGQSC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
+KY E NA+ATVEAL R VP AVPG+ FLSGG SEL+AT NLN
Sbjct: 241 TKKYSVEDNARATVEALQRTVPVAVPGVVFLSGGQSELDATRNLN 285
>sp|P53442|ALF_SCHMA Fructose-bisphosphate aldolase
Length = 363
Score = 403 bits (1035), Expect = e-112
Identities = 205/285 (71%), Positives = 226/285 (79%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
M F YL+E Q +L+ IA AI +PGKGILAADEST T+GKR + I ++N E NRR YR
Sbjct: 1 MSRFQPYLTEAQENDLRRIAQAICAPGKGILAADESTATMGKRLQQIGVENNEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
QLLF+ D LA NISGVIL+ ETLHQK DDG+ L L +R IIPGIKVD G VPL GT
Sbjct: 61 QLLFSADHKLAENISGVILFEETLHQKSDDGKTLPTLLAERNIIPGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
+E TTQGLD L RCA Y + GC FAKWRCVLKI HTPSYLAM+ENANVLARYA ICQ+
Sbjct: 121 NETTTQGLDDLASRCAEYWRLGCRFAKWRCVLKISSHTPSYLAMLENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NGLVPIVEPEVLPDG HDL TAQRVTE VLAFVYKALADHH+YLEGTLLKPNMVTAG
Sbjct: 181 NGLVPIVEPEVLPDGDHDLLTAQRVTEQVLAFVYKALADHHVYLEGTLLKPNMVTAGQAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
+ Y P++NA ATV AL R VPPAVPGITFLSGG SEL+AT NLN
Sbjct: 241 KKAYTPQENALATVRALQRTVPPAVPGITFLSGGQSELDATKNLN 285
>sp|Q9GKW3|ALDOC_MACFA Fructose-bisphosphate aldolase C (Brain-type aldolase)
Length = 364
Score = 379 bits (974), Expect = e-105
Identities = 193/285 (67%), Positives = 220/285 (77%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP LS Q KEL DIA IV+PGKGILAADES G++ KR I ++NTE NRR YR
Sbjct: 1 MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
Q+LF+ D + + I GVI +HETL+QK D+G P V+ +QD+GI+ GIKVD G VPL GT
Sbjct: 61 QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGIVVGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKI + TPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
P KY PE+ A ATV AL R VPPAVPG+TFLSGG SE EA+LNLN
Sbjct: 241 PIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASLNLN 285
>sp|P07764|ALF_DROME Fructose-bisphosphate aldolase
Length = 361
Score = 379 bits (973), Expect = e-105
Identities = 195/285 (68%), Positives = 226/285 (79%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
M + Y S+ EL++IA IV+PGKGILAADES T+GKR + I ++NTE NRR YR
Sbjct: 1 MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
QLLF+TDP LA NISGVIL+HETL+QK DDG P + L+ +GII GIKVD G VPL G+
Sbjct: 61 QLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSE 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
DE TTQGLD L RCA YKKDGC FAKWRCVLKIG++TPSY +++ENANVLARYA ICQ
Sbjct: 121 DEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQS 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
+VPIVEPEVLPDG HDL AQ+VTE VLA VYKAL+DHH+YLEGTLLKPNMVTAG QS
Sbjct: 181 QRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAG-QS 239
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
+K PE+ A ATV+AL R VP AV G+TFLSGG SE EAT+NL+
Sbjct: 240 AKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLS 284
>sp|P09972|ALDOC_HUMAN Fructose-bisphosphate aldolase C (Brain-type aldolase)
Length = 364
Score = 378 bits (970), Expect = e-104
Identities = 192/285 (67%), Positives = 219/285 (76%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP LS Q KEL DIA IV+PGKGILAADES G++ KR I ++NTE NRR YR
Sbjct: 1 MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
Q+LF+ D + + I GVI +HETL+QK D+G P V+ +QD+GI+ GIKVD G VPL GT
Sbjct: 61 QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGIVVGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKI + TPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
P KY PE+ A ATV AL R VPPAVPG+TFLSGG SE EA+ NLN
Sbjct: 241 PIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLN 285
>sp|P05063|ALDOC_MOUSE Fructose-bisphosphate aldolase C (Brain-type aldolase) (Aldolase 3)
(Zebrin II) (Scrapie-responsive protein 2)
Length = 363
Score = 377 bits (967), Expect = e-104
Identities = 193/285 (67%), Positives = 219/285 (76%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP LS Q KEL DIA IV+PGKGILAADES G++ KR I ++NTE NRR YR
Sbjct: 1 MPHSYPALSAEQKKELSDIALRIVTPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
Q+LF+ D + + I GVI +HETL+QK D+G P V+ +QD+GI+ GIKVD G VPL GT
Sbjct: 61 QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGILVGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKI TPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLLERCAQYKKDGADFAKWRCVLKISDRTPSALAILENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
P KY PE+ A ATV AL R VPPAVPG+TFLSGG SE EA+LNLN
Sbjct: 241 PIKYSPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASLNLN 285
>sp|P53446|ALF2_LAMJA Fructose-bisphosphate aldolase, non-muscle type
Length = 364
Score = 375 bits (962), Expect = e-103
Identities = 191/278 (68%), Positives = 218/278 (78%)
Frame = +3
Query: 36 LSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYRQLLFATD 215
L+ Q KEL +IA IVS GKGILAADESTGT+GKR I ++N + NRR YRQLLF++D
Sbjct: 8 LTPEQKKELAEIAQRIVSNGKGILAADESTGTMGKRLSAIKVENVDENRRVYRQLLFSSD 67
Query: 216 PILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTFDECTTQG 395
P + + I GVI Y ETL+QK DDG P VK ++DRGI+ GIKVD G VPL GT E TTQG
Sbjct: 68 PSVTKAIGGVIFYEETLYQKTDDGTPFVKLIKDRGIVVGIKVDKGTVPLAGTDGESTTQG 127
Query: 396 LDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQKNGLVPIV 575
LDGL ERCA YKKDG FAKWRCVLKI ++TPS LA+ ENANVLARYA ICQ+NGLVPIV
Sbjct: 128 LDGLAERCARYKKDGADFAKWRCVLKISKNTPSALAIAENANVLARYASICQQNGLVPIV 187
Query: 576 EPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQSPRKYCPE 755
EPE+LPDG HDL T Q VTE VLA YKAL+DHH+YLEG+LLKPNMVTAG S + P+
Sbjct: 188 EPEILPDGDHDLKTCQYVTEKVLAATYKALSDHHVYLEGSLLKPNMVTAGQASKIRCSPQ 247
Query: 756 QNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
+ A ATV AL R VP AVPGITFLSGG SE +A+LNLN
Sbjct: 248 EVAMATVTALRRTVPSAVPGITFLSGGQSEEDASLNLN 285
>sp|P09117|ALDOC_RAT Fructose-bisphosphate aldolase C (Brain-type aldolase)
Length = 363
Score = 375 bits (962), Expect = e-103
Identities = 192/285 (67%), Positives = 219/285 (76%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP LS Q KEL DIA IV+PGKGILAADES G++ KR I ++NTE NRR YR
Sbjct: 1 MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
Q+LF+ D + + I GVI +HETL+QK D+G P V+ +Q++GI+ GIKVD G VPL GT
Sbjct: 61 QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQEKGILVGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKI TPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLLERCAQYKKDGADFAKWRCVLKISDRTPSALAILENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQFVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
P KY PE+ A ATV AL R VPPAVPG+TFLSGG SE EA+LNLN
Sbjct: 241 PIKYSPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASLNLN 285
>sp|Q5R1X4|ALDOC_PANTR Fructose-bisphosphate aldolase C (Brain-type aldolase)
Length = 364
Score = 375 bits (962), Expect = e-103
Identities = 190/285 (66%), Positives = 218/285 (76%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP LS Q KEL DIA IV+PGKGILAADES G++ KR I ++NTE NRR YR
Sbjct: 1 MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
Q+LF+ D + + I GVI +HETL+QK D+G P ++ + D+GI+ GIKVD G VPL GT
Sbjct: 61 QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFIRTILDKGIVVGIKVDKGVVPLAGTD 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKI + TPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
P KY PE+ A ATV AL R VPPAVPG+TFLSGG SE EA+ NLN
Sbjct: 241 PIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLN 285
>sp|P05065|ALDOA_RAT Fructose-bisphosphate aldolase A (Muscle-type aldolase)
Length = 364
Score = 370 bits (951), Expect = e-102
Identities = 189/285 (66%), Positives = 219/285 (76%)
Frame = +3
Query: 15 MPEFARYLSEHQLKELKDIANAIVSPGKGILAADESTGTLGKRFKGIHLDNTETNRRQYR 194
MP L+ Q KEL DIA+ IV+PGKGILAADESTG++ KR + I +NTE NRR YR
Sbjct: 1 MPHPYPALTPEQKKELADIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYR 60
Query: 195 QLLFATDPILARNISGVILYHETLHQKGDDGQPLVKYLQDRGIIPGIKVDTGCVPLLGTF 374
QLL D + I GVIL+HETL+QK DDG+P + ++ +G + GIKVD G VPL GT
Sbjct: 61 QLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTN 120
Query: 375 DECTTQGLDGLDERCAIYKKDGCHFAKWRCVLKIGQHTPSYLAMIENANVLARYAMICQK 554
E TTQGLDGL ERCA YKKDG FAKWRCVLKIG+HTPS LA++ENANVLARYA ICQ+
Sbjct: 121 GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSSLAIMENANVLARYASICQQ 180
Query: 555 NGLVPIVEPEVLPDGTHDLFTAQRVTEDVLAFVYKALADHHIYLEGTLLKPNMVTAGMQS 734
NG+VPIVEPE+LPDG HDL Q VTE VLA VYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 181 NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC 240
Query: 735 PRKYCPEQNAQATVEALMRRVPPAVPGITFLSGGMSELEATLNLN 869
+K+ E+ A ATV AL R VPPAVPG+TFLSGG SE EA++NLN
Sbjct: 241 TQKFSNEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASINLN 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,078,731
Number of Sequences: 369166
Number of extensions: 2413506
Number of successful extensions: 5978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5935
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)