Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F13
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplan... 30 1.7
sp|P35427|RL13A_RAT 60S ribosomal protein L13a 30 2.2
sp|P49371|HUGA_DOLMA Hyalurononglucosaminidase (Hyaluronida... 30 2.2
sp|P48347|14310_ARATH 14-3-3-like protein GF14 epsilon (Gen... 30 2.2
sp|P32354|DNA43_YEAST DNA43 protein 30 2.2
sp|Q92HD6|Y835_RICCN Hypothetical UPF0192 protein RC0835 pr... 30 2.2
sp|O17582|SPR4_CAEEL Suppressor of presenilin protein 4 29 2.9
sp|Q9KUD1|PANC_VIBCH Pantoate--beta-alanine ligase (Pantoth... 29 2.9
sp|P12472|VP2_ROTBR RNA-binding protein VP2 (Major internal... 29 2.9
sp|O77392|IPYR_PLAF7 Probable inorganic pyrophosphatase (Py... 29 3.8
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplantation antigen P198) (Tum-P198
antigen)
Length = 203
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -3
Query: 300 MNQKLHFKYQNHIKIQFEFVRRLKNYEKNIEKELAKFNGLMQT 172
+ +K K + H + + + +R K EKN+EK++ KF +++T
Sbjct: 156 LEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKT 198
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a
Length = 203
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -3
Query: 300 MNQKLHFKYQNHIKIQFEFVRRLKNYEKNIEKELAKFNGLMQT 172
+ +K K + H + + + +R K EKN+EK++ KF +++T
Sbjct: 156 LEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLKT 198
>sp|P49371|HUGA_DOLMA Hyalurononglucosaminidase (Hyaluronidase) (Allergen Dol m 2) (Dol m
II)
Length = 331
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -2
Query: 346 RKNSIDIDKSDKNTWDESKIALQIPKSYKDSIRV-REEAQKLREEHRKR 203
+K SID+ +++ WD+ I L+ K ++ R+ EE KL ++ RK+
Sbjct: 126 KKFSIDLVRNEHPFWDKKMIELEASKRFEKYARLFMEETLKLAKKTRKQ 174
>sp|P48347|14310_ARATH 14-3-3-like protein GF14 epsilon (General regulatory factor 10)
Length = 254
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 249 EFVRRLKNYEKNIEKELAK 193
E V+RLKNY K +E ELAK
Sbjct: 78 ENVKRLKNYRKRVEDELAK 96
>sp|P32354|DNA43_YEAST DNA43 protein
Length = 571
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = -3
Query: 246 FVRRLKNYEKNIEKELAKFNGLMQTRLYS 160
F+ + +N +KN +K++AKF +M R+++
Sbjct: 113 FMEKFQNAKKNEDKQIAKFESMMNARVHT 141
>sp|Q92HD6|Y835_RICCN Hypothetical UPF0192 protein RC0835 precursor
Length = 1892
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 328 IDKSDKNTWDESKIALQIPKSYKDSIRVREEAQKL 224
+D+ KNTW + ++ + SYK +++ EEA+KL
Sbjct: 1579 LDEYHKNTWQDDLTSVYLAASYK-MLQMNEEAEKL 1612
>sp|O17582|SPR4_CAEEL Suppressor of presenilin protein 4
Length = 1311
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 295 SKIALQIPKSYKDSIRVREEAQKLREEHRKRISQIQWV 182
+K+ P+S + I V E+ QK+++ H++R + +Q V
Sbjct: 395 AKMKRTFPESEEKKIEVTEKVQKMKKMHKRRANTVQVV 432
>sp|Q9KUD1|PANC_VIBCH Pantoate--beta-alanine ligase (Pantothenate synthetase)
(Pantoate-activating enzyme)
Length = 293
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 258 IQFEFVRRLKNYEKNIEKELAKFNG 184
+QF+ LKNY + +E++L+K NG
Sbjct: 60 MQFDRAEDLKNYPRTLEEDLSKLNG 84
>sp|P12472|VP2_ROTBR RNA-binding protein VP2 (Major internal core protein)
Length = 880
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -2
Query: 355 QNSRKNSIDIDKSDK-----NTWDESKIALQIPKSYKDSIRVREEAQKLREEHRKRI 200
QN+R D S K ++ +E KIA ++ KS K+ + E K +EEH+K I
Sbjct: 30 QNNRMQLSDKVLSKKEEVVTDSQEEIKIADEVKKSTKEESKQLLEVLKTKEEHQKEI 86
>sp|O77392|IPYR_PLAF7 Probable inorganic pyrophosphatase (Pyrophosphate
phospho-hydrolase) (PPase)
Length = 380
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 313 KNTWDESKIALQIPKSYKDSIRVREEAQKLREEHRKR-ISQIQWVDAD*IILT*DELS 143
K +D+ + I K++ + RE+ +KL+EEH K I + +V+A I D+L+
Sbjct: 288 KQLYDKKESEDLIMKTHHYYLEFREDVKKLKEEHSKETIKEHDYVNAQNIQFNYDKLN 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,528,037
Number of Sequences: 369166
Number of extensions: 472284
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)