Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F12
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08730|GLYG_RAT Glycogenin-1 48 2e-05
sp|Q9R062|GLYG_MOUSE Glycogenin-1 45 2e-04
sp|P13280|GLYG_RABIT Glycogenin-1 44 5e-04
sp|P46976|GLYG_HUMAN Glycogenin-1 40 0.005
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 33 0.48
sp|P16534|HLYD_PASHA Leukotoxin secretion protein D 30 5.3
sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr... 30 5.3
sp|P55125|HLYD_PASSP Leukotoxin secretion protein D 30 5.3
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 30 7.0
sp|Q25113|BRAC_HEMPU Brachyury protein homolog (T protein) ... 29 9.1
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Frame = +1
Query: 1 LQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSFVP-HEGKFSPKSHQ 144
L LWW TF PLL M V G ++ L P + S + +
Sbjct: 246 LNLWWDTFTTNVLPLLQHHGLVKDAGSYLMMEHVTGALSDLSFGEAPPASQPSLSSEERK 305
Query: 145 QAWEHGIIDYRGLDRFENIKMHLDSKL 225
+ WE G DY G D F+NIK LD+ L
Sbjct: 306 ERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 45.1 bits (105), Expect = 2e-04
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Frame = +1
Query: 1 LQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSF-VPHEGKFSPKSHQ 144
L LWW TF PLL M V G ++ L + S + +
Sbjct: 246 LNLWWDTFTTNVLPLLQHHGLVKDASSYLMMEHVSGALSDLSFGEAPAAPQPSMSSEERK 305
Query: 145 QAWEHGIIDYRGLDRFENIKMHLDSKL 225
+ WE G DY G D F+NIK LD+ L
Sbjct: 306 ERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 43.5 bits (101), Expect = 5e-04
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Frame = +1
Query: 1 LQLWWTTFIAYTKPLLHDE--MGGVCGRMASLDVSSFVPH----------EGKFSPKSHQ 144
L +WW F PLL + C DVS V H + S + +
Sbjct: 246 LNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERK 305
Query: 145 QAWEHGIIDYRGLDRFENIKMHLDSKL 225
+ WE G DY G D F+NIK LD+ L
Sbjct: 306 ERWEQGQADYMGADSFDNIKKKLDTYL 332
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/104 (27%), Positives = 37/104 (35%), Gaps = 29/104 (27%)
Frame = +1
Query: 1 LQLWWTTFIAYTKPLLHD-------------------EMGGVCGRMASLDVSSFVPH--- 114
L LWW F PLL + CG DVS + H
Sbjct: 246 LILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAISHLSL 305
Query: 115 -------EGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 225
+ S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 306 GEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYL 349
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 33.5 bits (75), Expect = 0.48
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 121 KFSPKSHQQAWEHGIIDYRGLDRFENIKMHLD 216
+ SP+ ++ WE G IDY G D F I+ LD
Sbjct: 466 ELSPEEERRKWEEGRIDYMGKDAFARIQEKLD 497
>sp|P16534|HLYD_PASHA Leukotoxin secretion protein D
Length = 478
Score = 30.0 bits (66), Expect = 5.3
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -1
Query: 644 RFGKSIITIKIKRNIE*SRQLAIDVINNNTQKQA 543
+F KS + K+K++IE RQL +++ NN ++QA
Sbjct: 293 QFFKSDVLEKLKQHIENERQLRLELEKNNQRRQA 326
>sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase)
Length = 315
Score = 30.0 bits (66), Expect = 5.3
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 1 LQLWWTTFIAYTKPLLHDEMGGVCGRMASLDVSSFVPHEGKFSPKSHQQAWEHGIIDYRG 180
+QL T AY+K + HDE + +M L +FV G P+ QA E + G
Sbjct: 54 VQLLGKTETAYSKNMSHDERLMIFRKMCQLTTPAFVISTGLPVPEELVQAGEENGVPILG 113
Query: 181 LDR-----FENIKMHLDSKLA 228
N+ +L+ KLA
Sbjct: 114 TKMTSSRILSNMTNYLEGKLA 134
>sp|P55125|HLYD_PASSP Leukotoxin secretion protein D
Length = 478
Score = 30.0 bits (66), Expect = 5.3
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -1
Query: 644 RFGKSIITIKIKRNIE*SRQLAIDVINNNTQKQA 543
+F KS + K+K++IE RQL +++ NN ++QA
Sbjct: 293 QFFKSDVLEKLKQHIENERQLQLELEKNNQRRQA 326
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 29.6 bits (65), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 569 INNNTQKQAYNSNFQNSNNTTCSNNVGK*SQKG 471
INNN NSN N+NN + +NN S G
Sbjct: 114 INNNNNNNNNNSNINNNNNNSNNNNNNNNSNLG 146
Score = 29.3 bits (64), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 566 NNNTQKQAYNSNFQNSNNTTCSNN 495
NNNT N+N QN+NN NN
Sbjct: 336 NNNTNNNNNNANNQNTNNNNMGNN 359
>sp|Q25113|BRAC_HEMPU Brachyury protein homolog (T protein) (HpTa)
Length = 434
Score = 29.3 bits (64), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 103 FVPHEGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDS 219
F+P G F P HQ G+ + G DR+ ++ H S
Sbjct: 249 FLPGSGAFGPTPHQFNPSIGLPSHAGCDRYGGLRSHRTS 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,135,617
Number of Sequences: 369166
Number of extensions: 1082938
Number of successful extensions: 3884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3620
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)