Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F08
(569 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein) 39 0.012
sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa prot... 37 0.035
sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) pr... 36 0.077
sp|P47068|BBC1_YEAST Myosin tail region-interacting protein... 36 0.077
sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 33 0.65
sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precur... 32 1.1
sp|Q03209|VP61_NPVAC 61 kDa protein 32 1.1
sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subuni... 32 1.5
sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precur... 31 1.9
sp|P56720|SRBP1_RAT Sterol regulatory element binding prote... 31 1.9
>sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein)
Length = 104
Score = 38.5 bits (88), Expect = 0.012
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Frame = +3
Query: 240 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGI---LLFGSTGSALGI-LGS 386
I A SIAA M G V AGS AILQS+GA GL + ++ G G+ALG LGS
Sbjct: 41 IAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS 100
>sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa protein (p27) (ISG12(a) protein)
Length = 122
Score = 37.0 bits (84), Expect = 0.035
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Frame = +3
Query: 240 ITAGSIAASMQGPAVVA-------GSTFAILQSLGATGLGIL---LFGSTGSAL 371
I + SIAA M A +A GS A LQSLGATGL L + GS GSA+
Sbjct: 61 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAI 114
>sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) protein) (TLH29 protein)
(pIFI27-like protein)
Length = 130
Score = 35.8 bits (81), Expect = 0.077
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = +3
Query: 240 ITAGSIAASMQGPAVVA-------GSTFAILQSLGATGLGI---LLFGSTGSALG 374
I A SIAA M A +A GS A LQS+GA GL +L S GS LG
Sbjct: 33 IAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLG 87
>sp|P47068|BBC1_YEAST Myosin tail region-interacting protein MTI1 (BBC1 protein)
Length = 1157
Score = 35.8 bits (81), Expect = 0.077
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -2
Query: 382 PKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPPKPNP 221
P +PSA PV P P APS + V P ++A P + A +P V P P P
Sbjct: 707 PSVPSAPPVPPAP--PALSAPSVPPVPPVPPVSSAPPALSAPSIPPVPPTPPAP 758
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1
Length = 2042
Score = 32.7 bits (73), Expect = 0.65
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -2
Query: 412 SHQPNFTAKEPKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPP 233
+H+ + EP IP+A + P+ +PVAP A A ++PA P
Sbjct: 1180 THRSSVKTPEPNIPTAPELQPSTPTDQPVAPEPLSRATRGRTPRASVKTSEPVVPAAPEP 1239
Query: 232 KPN 224
+P+
Sbjct: 1240 QPS 1242
>sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +3
Query: 240 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGILLFGSTGSALG 374
I A S+AAS+ G V AG A LQSLGA G +++ G+ G+ +G
Sbjct: 66 IAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVI-GNIGALMG 116
>sp|Q03209|VP61_NPVAC 61 kDa protein
Length = 543
Score = 32.0 bits (71), Expect = 1.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 385 EPKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPPKPNPNKGRI 206
EPK PSA P P P P P+ + ++ A P ++ LP+ + P P P+ +
Sbjct: 270 EPKPPSASPPPPPPPPPPPAPPAPPPMVDLSSAPPPPPLVD---LPSEMLPPPAPSLSNV 326
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 753
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Frame = -2
Query: 418 LHSHQ-PNFTAKEPKIPSAEP--------VDPNNKIPKPVAPSDCKIANVLPATTAGPCI 266
+HS+Q P A P PS P NN +P P AP PA +
Sbjct: 308 VHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGT 367
Query: 265 EAAILPAVIPPKPN 224
A AV PP P+
Sbjct: 368 PAPYAQAVAPPAPS 381
>sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +3
Query: 240 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGILLFGSTGSALG 374
I A S+AAS+ G V AG A LQSLGA G ++ G+ G+ +G
Sbjct: 66 IAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVIT-GNIGALMG 116
>sp|P56720|SRBP1_RAT Sterol regulatory element binding protein 1 (SREBP-1) (Sterol
regulatory element-binding transcription factor 1)
(Adipocyte determination-and differentiation-dependent
factor 1) (ADD1)
Length = 1024
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 358 VDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVI--PPKPNPNKGRI 206
V P P P AP+ K+ +P + GP I+ +P I PP P P+ G +
Sbjct: 67 VTPAPLSPPPSAPTAVKMYPSVPPFSPGPGIKEEPVPLTILQPPAPQPSPGTL 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,831,409
Number of Sequences: 369166
Number of extensions: 1111715
Number of successful extensions: 3888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3870
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)