Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E23
(660 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 70 4e-12
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 67 4e-11
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 67 4e-11
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 67 4e-11
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 67 4e-11
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 67 5e-11
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 66 7e-11
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 66 7e-11
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 66 7e-11
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 66 7e-11
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 70.5 bits (171), Expect = 4e-12
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Frame = +2
Query: 2 TGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGA 169
+G VKWF+ K+GYGFI+ DD +D+FVH DGE+V FD+V+G
Sbjct: 34 SGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91
Query: 170 KGLEARNVTGPNGGDVIGGK 229
KG EA NVTGP G +V G K
Sbjct: 92 KGNEAANVTGPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 67.0 bits (162), Expect = 4e-11
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 39 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP G V G K
Sbjct: 97 GAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 67.0 bits (162), Expect = 4e-11
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 59 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP G V G K
Sbjct: 117 GAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 67.0 bits (162), Expect = 4e-11
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 61 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP G V G K
Sbjct: 119 GAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 67.0 bits (162), Expect = 4e-11
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 58 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP G V G K
Sbjct: 116 GAEAANVTGPGGVPVQGSK 134
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 66.6 bits (161), Expect = 5e-11
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 96 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 173 GLEARNVTGPNGGDVIGGKPYEP 241
G EA NVTGP GG + G Y P
Sbjct: 154 GAEATNVTGP-GGVPVKGSRYAP 175
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 66.2 bits (160), Expect = 7e-11
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 85 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP+G V G +
Sbjct: 143 GAEAANVTGPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 66.2 bits (160), Expect = 7e-11
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D + +D+FVH DGE V FD+V+G K
Sbjct: 44 GTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP G V G +
Sbjct: 102 GAEAANVTGPGGVPVKGSR 120
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 66.2 bits (160), Expect = 7e-11
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 93 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP+G V G +
Sbjct: 151 GAEAANVTGPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 66.2 bits (160), Expect = 7e-11
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 5 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAK 172
G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G K
Sbjct: 85 GTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 173 GLEARNVTGPNGGDVIGGK 229
G EA NVTGP+G V G +
Sbjct: 143 GAEAANVTGPDGVPVEGSR 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,152,509
Number of Sequences: 369166
Number of extensions: 808465
Number of successful extensions: 3169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)