Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E21
(329 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P67962|KC1A_CHICK Casein kinase I, alpha isoform (CKI-al... 50 2e-06
sp|P48729|KC1A_HUMAN Casein kinase I, alpha isoform (CKI-al... 50 2e-06
sp|P67829|KC1A_SHEEP Casein kinase I, alpha isoform (CKI-al... 50 2e-06
sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in c... 50 2e-06
sp|Q8N752|KC1AL_HUMAN Casein kinase I, alpha-like isoform (... 50 2e-06
sp|P97633|KC1A_RAT Casein kinase I, alpha isoform (CKI-alph... 50 2e-06
sp|P54367|KC1A_DROME Casein kinase I, alpha isoform (CKI-al... 46 2e-05
sp|P35507|KC1B_BOVIN Casein kinase I, beta isoform (CKI-beta) 43 2e-04
sp|O76324|DCO_DROME Discs overgrown protein kinase (Double-... 42 3e-04
sp|Q06486|KC1D_RAT Casein kinase I, delta isoform (CKI-delt... 40 0.002
>sp|P67962|KC1A_CHICK Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67963|KC1A_XENLA Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 337
Score = 49.7 bits (117), Expect = 2e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGG 128
LR+ F LFRTLN YDY FDWT+LKQKA QQ + G G
Sbjct: 277 LRQLFRILFRTLNHQYDYTFDWTMLKQKAA--QQAASSSGQG 316
>sp|P48729|KC1A_HUMAN Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|Q8BK63|KC1A_MOUSE Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 337
Score = 49.7 bits (117), Expect = 2e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGG 128
LR+ F LFRTLN YDY FDWT+LKQKA QQ + G G
Sbjct: 277 LRQLFRILFRTLNHQYDYTFDWTMLKQKAA--QQAASSSGQG 316
>sp|P67829|KC1A_SHEEP Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67828|KC1A_RABIT Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67827|KC1A_BOVIN Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 325
Score = 49.7 bits (117), Expect = 2e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGG 128
LR+ F LFRTLN YDY FDWT+LKQKA QQ + G G
Sbjct: 277 LRQLFRILFRTLNHQYDYTFDWTMLKQKAA--QQAASSSGQG 316
>sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in chromosome III
Length = 341
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGGG 131
LR+ F LFRTLN YDY FDWT+LKQKA QQS G G
Sbjct: 276 LRQLFRILFRTLNHQYDYTFDWTMLKQKA----QQSQSSGVPG 314
>sp|Q8N752|KC1AL_HUMAN Casein kinase I, alpha-like isoform (CKI-alpha-like) (CK1)
Length = 337
Score = 49.7 bits (117), Expect = 2e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGG 128
LR+ F LFRTLN YDY FDWT+LKQKA QQ + G G
Sbjct: 277 LRQLFRILFRTLNHQYDYTFDWTMLKQKAA--QQAASSSGQG 316
>sp|P97633|KC1A_RAT Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 325
Score = 49.7 bits (117), Expect = 2e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGG 128
LR+ F LFRTLN YDY FDWT+LKQKA QQ + G G
Sbjct: 277 LRQLFRILFRTLNHQYDYTFDWTMLKQKAA--QQAASSSGQG 316
>sp|P54367|KC1A_DROME Casein kinase I, alpha isoform (CKI-alpha) (DmCK1)
Length = 337
Score = 46.2 bits (108), Expect = 2e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQK 86
LR+ F LFRTLN YDY++DWT+LKQK
Sbjct: 280 LRQLFRILFRTLNHQYDYIYDWTMLKQK 307
>sp|P35507|KC1B_BOVIN Casein kinase I, beta isoform (CKI-beta)
Length = 336
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLKQKAVGMQQQSHQCGGGG 131
LR+ F LFR L++ +DY FDW +LKQKA +QQ+ G G
Sbjct: 277 LRQLFRLLFRKLSYQHDYAFDWIVLKQKA---EQQASSSSGEG 316
>sp|O76324|DCO_DROME Discs overgrown protein kinase (Double-time protein)
Length = 440
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLK 80
LR+ F NLF L F YDYVFDW LLK
Sbjct: 269 LRKLFRNLFHRLGFTYDYVFDWNLLK 294
>sp|Q06486|KC1D_RAT Casein kinase I, delta isoform (CKI-delta)
sp|Q9DC28|KC1D_MOUSE Casein kinase I, delta isoform (CKI-delta) (CKId)
Length = 415
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 3 LRESFSNLFRTLNFAYDYVFDWTLLK 80
LR+ F NLF F+YDYVFDW +LK
Sbjct: 269 LRQLFRNLFHRQGFSYDYVFDWNMLK 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,185,800
Number of Sequences: 369166
Number of extensions: 552899
Number of successful extensions: 1627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)