Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E20
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor 316 6e-86
sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathe... 306 3e-83
sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor 294 2e-79
sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathe... 292 9e-79
sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Catheps... 291 2e-78
sp|P18242|CATD_MOUSE Cathepsin D precursor 291 2e-78
sp|P80209|CATD_BOVIN Cathepsin D precursor 281 1e-75
sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor 276 7e-74
sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light... 275 1e-73
sp|Q800A0|CATE_RANCA Cathepsin E precursor 262 8e-70
>sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor
Length = 387
Score = 316 bits (809), Expect = 6e-86
Identities = 161/274 (58%), Positives = 192/274 (70%), Gaps = 9/274 (3%)
Frame = +1
Query: 43 LLVFLIINATCGALF------RVPLKKMESARSNIKKFNMMLSHFTK--NGKVTPFPEPL 198
+L+ II C A+ RV L K ESAR + + + + N P PEPL
Sbjct: 1 MLIKSIIALVCLAVLSQADFVRVQLHKTESARQHFRNVDTEIKQLRLKYNAVSGPVPEPL 60
Query: 199 NNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTY 378
+NY+DAQY+G ITIGTPPQ F V+FDTGSSNLWVPSK+C TNIACL H KY++ KSST+
Sbjct: 61 SNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTF 120
Query: 379 VKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMA 558
KNGT F I+YG+GSLSG+LSTDTV + G +V QTF EAI+EPG+ FVAAKFDGILG+
Sbjct: 121 EKNGTAFHIQYGSGSLSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLG 180
Query: 559 YPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYT 738
Y SISVD V PVF NM Q L+DAP+FSFYLNRD + GGEI+FGGSD+N Y G FTY
Sbjct: 181 YSSISVDGVVPVFYNMFNQGLIDAPVFSFYLNRDPSAAEGGEIIFGGSDSNKYTGDFTYL 240
Query: 739 PVTSKTYWQFKMDGLSMLGKTYCTE-CIAIADTG 837
V K YWQFKMD + + +C C AIADTG
Sbjct: 241 SVDRKAYWQFKMDSVKVGDTEFCNNGCEAIADTG 274
>sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 398
Score = 306 bits (785), Expect = 3e-83
Identities = 158/286 (55%), Positives = 194/286 (67%), Gaps = 14/286 (4%)
Frame = +1
Query: 22 MKKEATFLLVFLIINATCGALFRVPLKKMESAR-------SNIKKFNMMLSHFTK----- 165
M +L+ L + C AL R+PL K S R S I N ++ F K
Sbjct: 1 MAPRGLLVLLLLALVGPCAALIRIPLTKFTSTRRMLTEVGSEIPDMNA-ITQFLKFKLGF 59
Query: 166 NGKVTPFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTH 345
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS C + +IACL H
Sbjct: 60 ADLAEPTPEILKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLH 119
Query: 346 RKYDSSKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFV 525
KYD+SKSSTYV+NGT+F+I YGTGSLSGFLS DTVT+ + NQ FGEA+ +PG+TF+
Sbjct: 120 HKYDASKSSTYVENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFI 179
Query: 526 AAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSD 705
AAKFDGILGMA+P ISVD+VTP F N++ QKL++ IFSFYLNRD +PGGE+L GG+D
Sbjct: 180 AAKFDGILGMAFPRISVDKVTPFFDNVMQQKLIEKNIFSFYLNRDPTAQPGGELLLGGTD 239
Query: 706 TNFYNGPFTYTPVTSKTYWQFKMDGLSML-GKTYCT-ECIAIADTG 837
+Y+G F++ VT K YWQ MD + + G T C C AI DTG
Sbjct: 240 PKYYSGDFSWVNVTRKAYWQVHMDSVDVANGLTLCKGGCEAIVDTG 285
>sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor
Length = 396
Score = 294 bits (753), Expect = 2e-79
Identities = 147/279 (52%), Positives = 188/279 (67%), Gaps = 13/279 (4%)
Frame = +1
Query: 40 FLLVFLIINATCGALFRVPLKKMESARSNIKKFNMMLSHFTKN-----------GKVTPF 186
+L +F + T A+ R+PLKK S R + + + P
Sbjct: 5 YLFLFAVFAWTSDAIVRIPLKKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPT 64
Query: 187 PEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSK 366
PE L NYMDAQY+G+I +GTP Q+FTV+FDTGSSNLW+PS C T+IACL H KY+ +K
Sbjct: 65 PETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAK 124
Query: 367 SSTYVKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGI 546
SSTYVKNGT+F+I+YG+GSLSG+LS D+ TI V Q FGEAI +PG+ F+AAKFDGI
Sbjct: 125 SSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGI 184
Query: 547 LGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGP 726
LGMAYP ISVD V PVF M++QK V+ +FSFYLNR+ + +PGGE+L GG+D +Y G
Sbjct: 185 LGMAYPRISVDGVPPVFDMMMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGD 244
Query: 727 FTYTPVTSKTYWQFKMDGLSMLGK-TYCTE-CIAIADTG 837
F Y PVT + YWQ MDG+S+ + T C + C AI DTG
Sbjct: 245 FNYVPVTRQAYWQIHMDGMSIGSQLTLCKDGCEAIVDTG 283
>sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 412
Score = 292 bits (747), Expect = 9e-79
Identities = 152/297 (51%), Positives = 189/297 (63%), Gaps = 25/297 (8%)
Frame = +1
Query: 22 MKKEATFLLVFLIINATCGALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------- 180
M+ + L ++ A AL R+PL K S R + + + G V+
Sbjct: 1 MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVP 60
Query: 181 -----PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTH 345
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H
Sbjct: 61 AVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH 120
Query: 346 RKYDSSKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTI-----------AGANVVNQTFG 492
KY+S KSSTYVKNGT F I YG+GSLSG+LS DTV++ G V Q FG
Sbjct: 121 HKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFG 180
Query: 493 EAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGK 672
EA +PG+TF+AAKFDGILGMAYP ISV+ V PVF N++ QKLVD IFSFYL+RD + +
Sbjct: 181 EATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ 240
Query: 673 PGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSML-GKTYCTE-CIAIADTG 837
PGGE++ GG+D+ +Y G +Y VT K YWQ +D + + G T C E C AI DTG
Sbjct: 241 PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTG 297
>sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Cathepsin D 12 kDa light chain;
Cathepsin D 9 kDa light chain; Cathepsin D 34 kDa heavy
chain; Cathepsin D 30 kDa heavy chain]
Length = 407
Score = 291 bits (744), Expect = 2e-78
Identities = 150/292 (51%), Positives = 191/292 (65%), Gaps = 20/292 (6%)
Frame = +1
Query: 22 MKKEATFLLVFLIINATCGALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------- 180
M+ LL+ +++A+ AL R+PL+K S R + + + G +T
Sbjct: 1 MQTPGVLLLILGLLDASSSALIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSS 60
Query: 181 -----PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTH 345
P E L NY+DAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H
Sbjct: 61 PRTKEPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVH 120
Query: 346 RKYDSSKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTI------AGANVVNQTFGEAISE 507
KY+S KSSTYVKNGT F I YG+GSLSG+LS DTV++ G V Q FGEA +
Sbjct: 121 HKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQ 180
Query: 508 PGMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEI 687
PG+ F+AAKFDGILGM YP ISV++V PVF N++ QKLV+ IFSFYLNRD G+PGGE+
Sbjct: 181 PGVVFIAAKFDGILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGEL 240
Query: 688 LFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSMLGK-TYCT-ECIAIADTG 837
+ GG+D+ +Y+G +Y VT K YWQ MD L + + T C C AI DTG
Sbjct: 241 MLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSELTLCKGGCEAIVDTG 292
>sp|P18242|CATD_MOUSE Cathepsin D precursor
Length = 410
Score = 291 bits (744), Expect = 2e-78
Identities = 153/295 (51%), Positives = 189/295 (64%), Gaps = 23/295 (7%)
Frame = +1
Query: 22 MKKEATFLLVFLIINATCGALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------- 180
MK LL+ ++ ++ A+ R+PL+K S R + + + G +T
Sbjct: 1 MKTPGVLLLILGLLASSSFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSS 60
Query: 181 -----PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTH 345
P E L NY+DAQY+GDI IGTPPQ FTV+FDTGSSNLWVPS CKI +IAC H
Sbjct: 61 PKTTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVH 120
Query: 346 RKYDSSKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEA 498
KY+S KSSTYVKNGT F I YG+GSLSG+LS DTV++ G V Q FGEA
Sbjct: 121 HKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEA 180
Query: 499 ISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPG 678
+PG+ FVAAKFDGILGM YP ISV+ V PVF N++ QKLVD IFSFYLNRD G+PG
Sbjct: 181 TKQPGIVFVAAKFDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPG 240
Query: 679 GEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSMLGK-TYCT-ECIAIADTG 837
GE++ GG+D+ +Y+G +Y VT K YWQ MD L + + T C C AI DTG
Sbjct: 241 GELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNELTLCKGGCEAIVDTG 295
>sp|P80209|CATD_BOVIN Cathepsin D precursor
Length = 390
Score = 281 bits (720), Expect = 1e-75
Identities = 145/275 (52%), Positives = 180/275 (65%), Gaps = 23/275 (8%)
Frame = +1
Query: 82 LFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------------PFPEPLNNYMDAQYF 225
+ R+PL K S R + + + G ++ P PE L NYMDAQY+
Sbjct: 1 VIRIPLHKFTSIRRTMSEAAGXVXXLIAKGPISKYATGEPAVRQGPIPELLKNYMDAQYY 60
Query: 226 GDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSI 405
G+I IGTPPQ FTV+FDTGS+NLWVPS CK+ +IAC THRKY+S KSSTYVKNGT F I
Sbjct: 61 GEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDI 120
Query: 406 RYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMA 558
YG+GSLSG+LS DTV++ G V QTFGEAI +PG+ F+AAKFDGILGMA
Sbjct: 121 HYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMA 180
Query: 559 YPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYT 738
YP ISV+ V PVF N++ QKLVD +FSF+LNRD +PGGE++ GG+D+ +Y G +
Sbjct: 181 YPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFH 240
Query: 739 PVTSKTYWQFKMDGLSM-LGKTYCT-ECIAIADTG 837
VT + YWQ MD L + T C C AI DTG
Sbjct: 241 NVTRQAYWQIHMDQLDVGSSLTVCKGGCEAIVDTG 275
>sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor
Length = 365
Score = 276 bits (705), Expect = 7e-74
Identities = 137/230 (59%), Positives = 164/230 (71%), Gaps = 11/230 (4%)
Frame = +1
Query: 181 PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDS 360
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGS+NLWVPS CK+ +IAC H KY+S
Sbjct: 41 PIPELLTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNS 100
Query: 361 SKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEAISEPG 513
KSSTYVKNGT F I YG+GSLSG+LS DTV++ G V QTFGEAI +PG
Sbjct: 101 DKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPG 160
Query: 514 MTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILF 693
+ F+AAKFDGILGMAYP ISV+ V PVF N++ QKLVD +FSF+LNRD +PG E++
Sbjct: 161 VVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELML 220
Query: 694 GGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSM-LGKTYCT-ECIAIADTG 837
GG+D+ +Y G TY VT + YWQ MD L + T C C AI DTG
Sbjct: 221 GGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVGSSLTVCKGGCEAIVDTG 270
>sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light chain; Cathepsin D heavy
chain]
Length = 345
Score = 275 bits (702), Expect = 1e-73
Identities = 139/231 (60%), Positives = 166/231 (71%), Gaps = 12/231 (5%)
Frame = +1
Query: 181 PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDS 360
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S
Sbjct: 2 PIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNS 61
Query: 361 SKSSTYVKNGTDFSIRYGTGSLSGFLST-DTVT---------IAGANVVNQTFGEAISEP 510
KSSTYVKNGT F+I YG+GSLSG+LS+ DTV+ + G V QTFGEA +P
Sbjct: 62 GKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQP 121
Query: 511 GMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEIL 690
G+TF+AAKFDGILGMAYP ISV+ V PVF N++ QKLVD IFSFYLNRD +PGGE++
Sbjct: 122 GLTFIAAKFDGILGMAYPRISVNNVVPVFDNLMQQKLVDKDIFSFYLNRDPGAQPGGELM 181
Query: 691 FGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSM-LGKTYCT-ECIAIADTG 837
GG D+ +Y G Y VT K YWQ M+ +++ T C C AI DTG
Sbjct: 182 LGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSSLTLCKGGCEAIVDTG 232
>sp|Q800A0|CATE_RANCA Cathepsin E precursor
Length = 397
Score = 262 bits (670), Expect = 8e-70
Identities = 133/279 (47%), Positives = 183/279 (65%), Gaps = 13/279 (4%)
Frame = +1
Query: 40 FLLVFLIINATCGALFRVPLKKMESARSNIKKFNMMLSHFTKNGKV-----------TPF 186
FL+V LI++ G + RVPLK+ +S R +K+ + +TK G
Sbjct: 4 FLVVLLILSFVHG-IIRVPLKRQKSMRKILKEKGKLSHLWTKQGNEFLQLSDSCSSPETA 62
Query: 187 PEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSK 366
EPL NY+D +YFG I+IGTPPQ FTV+FDTGSSNLWVPS C T+ AC H +Y S+
Sbjct: 63 SEPLMNYLDVEYFGQISIGTPPQQFTVIFDTGSSNLWVPSIYC--TSQACTKHNRYRPSE 120
Query: 367 SSTYVKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGI 546
S+TYV NG F I+YGTG+L+G L D VT+ G V +QTF E++SEPG TF + FDGI
Sbjct: 121 STTYVSNGEAFFIQYGTGNLTGILGIDQVTVQGITVQSQTFAESVSEPGSTFQDSNFDGI 180
Query: 547 LGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGP 726
LG+AYP+++VD PVF NM+ Q LV+ P+F Y+NRD N GGE++ GG DT+ ++G
Sbjct: 181 LGLAYPNLAVDNCIPVFDNMIAQNLVELPLFGVYMNRDPNSADGGELVLGGFDTSRFSGQ 240
Query: 727 FTYTPVTSKTYWQFKMDGLSMLGKT-YCTE-CIAIADTG 837
+ P+T + YWQ ++D + + G+ +C++ C AI DTG
Sbjct: 241 LNWVPITVQGYWQIQVDSIQVAGQVIFCSDGCQAIVDTG 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,930,027
Number of Sequences: 369166
Number of extensions: 2135847
Number of successful extensions: 5841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5605
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)