Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E17
(894 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43394|K502_ACTCH Fruit protein PKIWI502 32 1.8
sp|P16065|GCY_STRPU Speract receptor precursor (Guanylate c... 31 5.3
sp|Q6KIH8|GRPE_MYCMO Protein grpE (HSP-70 cofactor) 31 5.3
sp|P17276|PH4H_DROME Protein henna [Includes: Phenylalanine... 30 7.0
sp|O52354|LDH_MYCGA L-lactate dehydrogenase (L-LDH) 30 7.0
>sp|P43394|K502_ACTCH Fruit protein PKIWI502
Length = 317
Score = 32.3 bits (72), Expect = 1.8
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 38 LSQEAVI*LHRHLQAAPMHYRPQTVLEIPQIYHHQHR*IWCILSILNLSDFLIAIYESKI 217
LS+ + LH L AP H+RP L P + +H H + + S + L D AI +
Sbjct: 15 LSRHPSLTLHSSLSHAPPHHRPVAFLRHPTLRYHHHGRLLSVASAI-LQD--TAIRQDTY 71
Query: 218 MWS 226
+W+
Sbjct: 72 IWT 74
>sp|P16065|GCY_STRPU Speract receptor precursor (Guanylate cyclase)
Length = 1125
Score = 30.8 bits (68), Expect = 5.3
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 397 MRGMADFSSHYVYNLNTQVFIEKQSDNKFLNTVNIRHVANSVRTHGWGIINTTINNAYVF 576
+R DF+S Y+++ Q+ L ++ H A G +++T +N+ Y
Sbjct: 365 LRAEIDFASVYMFDATMQL----------LEALDRTHAAGGDIYDGEEVVSTLLNSTYRS 414
Query: 577 LKDKFFQFSE 606
D F+QF E
Sbjct: 415 KTDTFYQFDE 424
>sp|Q6KIH8|GRPE_MYCMO Protein grpE (HSP-70 cofactor)
Length = 243
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/38 (28%), Positives = 26/38 (68%)
Frame = +1
Query: 592 FQFSEFLYDERIKGKLIKELHEFKERSATTDKSFSYYN 705
++FS+F +D+++ GK ++ + ++R A++DK+ N
Sbjct: 5 YKFSDFYFDKKLSGKEVEFSIQIQKREASSDKNLQSKN 42
>sp|P17276|PH4H_DROME Protein henna [Includes: Phenylalanine-4-hydroxylase (PAH)
(Phe-4-monooxygenase); Tryptophan 5-monooxygenase (TRH)
(Tryptophan 5-hydroxylase)]
Length = 452
Score = 30.4 bits (67), Expect = 7.0
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Frame = +1
Query: 214 DYVEHHLEN---VFYNLTAIYLSDWRNYAEMRRLAQNQYN--ICLTTPDMHLPSQSLEQG 378
DY + +E +F NLT +Y + A +YN L + ++ Q
Sbjct: 177 DYTKEEIETWGIIFRNLTKLYKTH----------ACREYNHVFPLLVDNCGFREDNIPQL 226
Query: 379 RDVLNIMRGMADFSSHYVYNL-NTQVFIEKQSDNKFLNTVNIRHVANSVRTHGWGIINTT 555
DV N +R F+ V L +++ F+ + F +T IRH + + T + +
Sbjct: 227 EDVSNFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHEL 286
Query: 556 INNAYVFLKDKFFQFSE 606
+ + +F F QFS+
Sbjct: 287 MGHVPLFADPAFAQFSQ 303
>sp|O52354|LDH_MYCGA L-lactate dehydrogenase (L-LDH)
Length = 323
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 394 IMRGMADFSSHYVYNLNTQVFIEKQSDNKFLNTVNIRHVANSVRTHGW 537
I M+ + Y+YNLNT + + Q D+K++ + V V HGW
Sbjct: 238 IAESMSLITRAYIYNLNTVLGVGVQLDDKYVASGIYFTVPAVVGKHGW 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,729,546
Number of Sequences: 369166
Number of extensions: 1997729
Number of successful extensions: 5311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5301
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)