Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E11
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceo... 314 2e-85
sp|Q02554|CUS1_YEAST Protein CUS1 119 2e-26
sp|Q5R789|ZCHC8_PONPY Zinc finger CCHC domain containing pr... 41 0.005
sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain containing pr... 41 0.005
sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain containing pr... 41 0.005
sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain containing pr... 38 0.044
sp|P30415|NKTR_MOUSE NK-tumor recognition protein (Natural-... 33 1.1
sp|Q9NRM1|ENAM_HUMAN Enamelin precursor 32 1.9
sp|Q9FFK1|SY31_ARATH Syntaxin 31 (AtSYP31) (AtSED5) 32 2.4
sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 (STF-1) (SF-1) 32 2.4
>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceosome associated protein 145)
(SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145
kDa subunit)
Length = 872
Score = 314 bits (804), Expect = 2e-85
Identities = 142/220 (64%), Positives = 172/220 (78%)
Frame = +3
Query: 9 RNTVPVPRHWCCTGKYLQGKRGFVKPPFKLPDFIAKTGIMEMRQTADDKESEKSLKNKMK 188
RN+VPVPRHWC KYLQGKRG KPPF+LPDFI +TGI EMR+ +KE +K++K+KM+
Sbjct: 472 RNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMR 531
Query: 189 DKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEAKRKENRPGLLSDELR 368
+K+RPK+G +DI Y+KL++AFF QTKP+LT GD+YY+GKE E + KE +PG LSDELR
Sbjct: 532 EKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELR 591
Query: 369 VALGMTTGPNSDKSPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPP 548
++LGM GPN+ K PPPWLIA QRYGPPPSYPNLKIPGLN IP CSFG+HAGGWGKPP
Sbjct: 592 ISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPP 651
Query: 549 VDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWGEVE 668
VD+ GKPLYGDVF N A + +E D WGE+E
Sbjct: 652 VDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWGELE 689
Score = 30.8 bits (68), Expect = 5.4
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = +3
Query: 390 GPNSDKSPPPWLIAQ----QRYGPPPSYPNLKIPGLNKGIPPGCSFGF---HAGGWGKPP 548
G + DK+ PP + AQ PP P L+ P PPG GF H G PP
Sbjct: 49 GEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPP 108
Query: 549 VDDDGKPL 572
G+P+
Sbjct: 109 PLRVGEPV 116
>sp|Q02554|CUS1_YEAST Protein CUS1
Length = 436
Score = 119 bits (297), Expect = 2e-26
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 9 RNTVPVPRHWCCTGKYLQGKRGFVKPPFKLPDFIAKTGIMEMRQTAD----DKESEKSLK 176
+N +PVP HW +YL G+ K PF+LPD I KT I +MR T D + EKSLK
Sbjct: 167 KNVIPVPSHWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLK 226
Query: 177 NKMKDKIRPKVGLVDISYEKLYNAFFV--EQTKPE-LTKFGDIYYQGKELEAKRK----- 332
+ +++PK+G +D+ Y+KL++ FF KP+ L FGD+YY+ + L +
Sbjct: 227 EASRARVQPKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMV 286
Query: 333 -ENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSYPNLKIPGLN 488
RPG +S ELR + + G PPW + + G P YP+LKI GLN
Sbjct: 287 DHKRPGRISQELRAIMNLPEG-----QLPPWCMKMKDIGLPTGYPDLKIAGLN 334
>sp|Q5R789|ZCHC8_PONPY Zinc finger CCHC domain containing protein 8
Length = 704
Score = 40.8 bits (94), Expect = 0.005
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 300 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 461
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 272 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 320
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain containing protein 8
Length = 709
Score = 40.8 bits (94), Expect = 0.005
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 300 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 461
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 277 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 325
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain containing protein 8
Length = 707
Score = 40.8 bits (94), Expect = 0.005
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 300 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 461
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 274 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 322
>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain containing protein 8
Length = 613
Score = 37.7 bits (86), Expect = 0.044
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 300 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 461
Y +E+E + + +PG++S EL+ ALG+T KS PP++ ++ G PP +
Sbjct: 173 YHAEEVEERFGKFKPGVISGELQDALGVTA-----KSLPPFIYRMRQLGYPPGW 221
>sp|P30415|NKTR_MOUSE NK-tumor recognition protein (Natural-killer cells
cyclophilin-related protein) (NK-TR protein)
Length = 1453
Score = 33.1 bits (74), Expect = 1.1
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +3
Query: 111 AKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFG 290
+ T + +T+ KE + + + DK +P G+ ++S + ++ L+
Sbjct: 1189 SSTSVTSPVETSGKKEGAEKSQMNLTDKWKPLQGVGNLSVSTATTSSALDVKA--LSTVP 1246
Query: 291 DIYYQGKELEAKRKEN-RPGLLSDELRVALGMTTGPNSDKS 410
++ QG +E K K RPG L DE+R + P + +S
Sbjct: 1247 EVKPQGLRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQES 1287
>sp|Q9NRM1|ENAM_HUMAN Enamelin precursor
Length = 1142
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 414 PPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPP 548
PPW I Q+ PPP Y I G P FG+H G G+PP
Sbjct: 172 PPWQIPQRL--PPPGYGRPPISNEEGGNPYFGYFGYHGFG-GRPP 213
>sp|Q9FFK1|SY31_ARATH Syntaxin 31 (AtSYP31) (AtSED5)
Length = 336
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +3
Query: 324 KRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPP 503
K ENR L S + V S PPPW + +G + +P LN G PP
Sbjct: 157 KAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFG---NLQQPLLPPLNTGAPP 213
Query: 504 G 506
G
Sbjct: 214 G 214
>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 (STF-1) (SF-1)
Length = 461
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +3
Query: 282 KFGDIYYQGKELEAKRKENRPGLLSDELRV-ALGMTTGPNSDKSPPPWLIAQQRYGPPPS 458
KFG +Y + + L+ ++K ++R + TGP PPP PPP
Sbjct: 94 KFGPMYKRDRALKQQKKA--------QIRANGFKLETGPPMGVPPPP--------PPPPD 137
Query: 459 YPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKP 569
Y + PGL+ P G + G AG P+ D G P
Sbjct: 138 Y--MLPPGLHVPEPKGLASGPPAG-----PLGDFGAP 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,521,062
Number of Sequences: 369166
Number of extensions: 1795709
Number of successful extensions: 5661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)