Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D23
(756 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromo... 100 3e-21
sp|P13284|GILT_HUMAN Gamma-interferon inducible lysosomal t... 94 3e-19
sp|P53600|COPZ_YEAST Coatomer zeta subunit (Zeta-coat prote... 32 2.4
sp|Q02206|RSC4_YEAST Chromatin structure remodeling complex... 31 4.1
sp|O00462|MANBA_HUMAN Beta-mannosidase precursor (Mannanase... 30 5.4
sp|P11976|PSTA_DICDI Prestalk protein precursor 30 7.0
sp|Q8WZ64|CEND1_HUMAN Centaurin-delta 1 (Cnt-d1) (Arf-GAP, ... 30 9.2
sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase beta' chai... 30 9.2
>sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III
Length = 323
Score = 100 bits (250), Expect = 3e-21
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Frame = +3
Query: 123 LDVYMETRCPDTQVFIDDQLVPVTKLLG--NYVEVTLYPYGKAEEKYVGDKWEFSCQHGP 296
LDVYME +CPDT F QL +LG N +E+ + P+GKA G+ +E CQHGP
Sbjct: 141 LDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGP 200
Query: 297 LECQGNTILACAISMTN-QSIYVPFTSCLMRDLNPVSNFRSCCEQFKLNLNQINKCFQGS 473
ECQ N ++ C I Y+P C+ + + E + ++ +C G+
Sbjct: 201 TECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEAMKCVTENYPSEYERMRECASGT 260
Query: 474 KGNELQHHYALATSSLVPKLVYIPWIILNKMYSKENQDQAATNLKALVCKHIKVPPPEC 650
+G L T+SL P + +IPWI++N N D A +L VC+ ++ P C
Sbjct: 261 RGRRLLALSGQKTASLTPAIDFIPWIVIN---GSRNSD-ALYDLTQNVCEAMQPMPSAC 315
>sp|P13284|GILT_HUMAN Gamma-interferon inducible lysosomal thiol reductase precursor
(Gamma-interferon-inducible protein IP-30)
Length = 261
Score = 94.4 bits (233), Expect = 3e-19
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 3/185 (1%)
Frame = +3
Query: 102 SQADKLLLDVYMETRCPDTQVFIDDQLVPVTKLLGNYVEVTLYPYGKAEEKYVGDKWEFS 281
S A + + +Y E C + F+ +L P L+ + VTL PYG A+E+ V +WEF
Sbjct: 68 SNAPLVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFK 127
Query: 282 CQHGPLECQGNTILACAISMTNQSIYVPFTSCLMRDLNPVSNFRSCCEQF---KLNLNQI 452
CQHG EC+ N + AC + + + T M + + C Q L+ + I
Sbjct: 128 CQHGEEECKFNKVEACVLDELDMELAF-LTIVCMEEFEDMERSLPLCLQLYAPGLSPDTI 186
Query: 453 NKCFQGSKGNELQHHYALATSSLVPKLVYIPWIILNKMYSKENQDQAATNLKALVCKHIK 632
+C G +G +L H A T +L P Y+PW+ +N K +DQ T L LVC+ +
Sbjct: 187 MECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVN---GKPLEDQ--TQLLTLVCQLYQ 241
Query: 633 VPPPE 647
P+
Sbjct: 242 GKKPD 246
>sp|P53600|COPZ_YEAST Coatomer zeta subunit (Zeta-coat protein) (Zeta-COP)
Length = 189
Score = 31.6 bits (70), Expect = 2.4
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Frame = +3
Query: 57 LYSSYY----RSDS----INNQISQADKLLLDVYMETRCPDTQVFI-DDQLVPVTKLLGN 209
+Y+ YY RSD + N + + + +Y +T D+++ I +D LV L
Sbjct: 22 IYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDSEILIFEDHLV----LYKE 77
Query: 210 YVEVTLYPYGKAEEKYVGDKWEFSCQHGPLE 302
Y+++T+Y EE + + FS G L+
Sbjct: 78 YIDITIYLVASLEENEIVLQQGFSAIRGALD 108
>sp|Q02206|RSC4_YEAST Chromatin structure remodeling complex protein RSC4 (Remodel the
structure of chromatin complex subunit RSC4)
Length = 625
Score = 30.8 bits (68), Expect = 4.1
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = +3
Query: 372 SCLMRDLNPVSNFRSCCEQFKLNLNQINKCFQGSKGNELQHHYALATSSLVPKLVYIPWI 551
S L D+ P SN +Q + N G + L Y L ++ KL+ IP
Sbjct: 335 SALDNDIEPESNREDLIDQADYDFNHFEGLGNGYNRSLLTEDYLLNPNNF-KKLIAIPET 393
Query: 552 ILNKMYSKENQDQAATNLKALVCKHIKVP 638
+ +++ ++ + +L +H+K+P
Sbjct: 394 VQSEVKNERSTTSDIEKTNSLESEHLKIP 422
>sp|O00462|MANBA_HUMAN Beta-mannosidase precursor (Mannanase) (Mannase)
Length = 879
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 290 WTIRMPRKYYFGLCHFYDKSIDICAFHVLFNERFESCFEFQ 412
W + P YFG HFYD D + V RF S + +Q
Sbjct: 518 WVSQNPNSNYFGDVHFYDYISDCWNWKVFPKARFASEYGYQ 558
>sp|P11976|PSTA_DICDI Prestalk protein precursor
Length = 1046
Score = 30.0 bits (66), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 288 HGPLECQGNTILA---CAISMTNQSIYVPFTSC 377
H P++C N +L C+I + I+VP T C
Sbjct: 1004 HTPVDCNDNNVLTCDYCSIKQGGKCIHVPMTQC 1036
>sp|Q8WZ64|CEND1_HUMAN Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GAP, ankyrin repeat and
pleckstrin homology domain-containing protein 2) (PARX
protein)
Length = 1704
Score = 29.6 bits (65), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 90 NNQISQADKLLLDVYMETRCPDTQVFI 170
+ Q+SQA LL++VY+E + PD + I
Sbjct: 1319 DTQVSQAGDLLIEVYVERKEPDCSIII 1345
>sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1407
Score = 29.6 bits (65), Expect = 9.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 57 LYSSYYRSDSINNQISQADKLLLDVYMETRCPDTQVFIDDQLVPVTK 197
L +S YR + + + ADKL+ Y + IDD L+P+ K
Sbjct: 604 LINSSYRMLGLKDTVVFADKLMYTGYAYATRAGVSICIDDMLIPIEK 650
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,009,181
Number of Sequences: 369166
Number of extensions: 1524071
Number of successful extensions: 2964
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2960
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)