Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D14-2
(487 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13679|YJ15_SCHPO Hypothetical protein C737.05 in chromo... 30 2.3
sp|Q9DBS9|OSR3_MOUSE Oxysterol binding protein-related prot... 30 3.9
sp|Q9H4L5|OSR3_HUMAN Oxysterol binding protein-related prot... 29 5.0
>sp|O13679|YJ15_SCHPO Hypothetical protein C737.05 in chromosome III
Length = 264
Score = 30.4 bits (67), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 56 SCKQSIFLFLYHHYHHVSPVLLSFSLCHSLSN*FLLVFCRVPL 184
S + F ++YHH++P +S L SL FLL + R+ +
Sbjct: 96 SSYDQLLYFRQNYYHHITPSAISSGLLVSLVLIFLLAYLRISI 138
>sp|Q9DBS9|OSR3_MOUSE Oxysterol binding protein-related protein 3 (OSBP-related protein
3) (ORP-3)
Length = 855
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 482 EKKQRELLRVARENQEIMERIIDQKPQYSVKDWDDDWSQNLAYID 348
EK QRE RV EN ++ +P++ K DD W N Y++
Sbjct: 801 EKLQRERRRVLEENG------VEHQPRFFRKSSDDAWVSNGTYLE 839
>sp|Q9H4L5|OSR3_HUMAN Oxysterol binding protein-related protein 3 (OSBP-related protein
3) (ORP-3)
Length = 887
Score = 29.3 bits (64), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 482 EKKQRELLRVARENQEIMERIIDQKPQYSVKDWDDDWSQNLAYID 348
E+ QRE RV EN ++ +P++ K DD W N Y++
Sbjct: 833 EQLQRERRRVLEENH------VEHQPRFFRKSDDDSWVSNGTYLE 871
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,068,928
Number of Sequences: 369166
Number of extensions: 413378
Number of successful extensions: 1552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)