Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D01-1
(443 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein 168 6e-42
sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 (SF3B... 155 3e-38
sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein 149 4e-36
sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein 138 5e-33
sp|O97018|SXL_CHRRU Sex-lethal protein homolog 50 2e-06
sp|O17310|SXL_MUSDO Sex-lethal protein homolog 49 4e-06
sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit (... 49 5e-06
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 48 8e-06
sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL) 48 8e-06
sp|P19339|SXL_DROME Sex-lethal protein 47 1e-05
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein
Length = 121
Score = 168 bits (425), Expect = 6e-42
Identities = 74/111 (66%), Positives = 92/111 (82%)
Frame = +1
Query: 31 KLPPNVSRILMVSNLPYELRDDEMYDIFGKYGTIRQIRVGNTTENKGKAFVVYEDIYDAQ 210
+LPP V+R+L V NLPY++ DEMYDIFGK+G IRQIRVGNT E +G AFVVYEDI+DA+
Sbjct: 8 RLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAK 67
Query: 211 NACEHLTGFNVCNRYICISYYQPNKVFKKVDYTAKNEELNNLKSKFGIGTP 363
NAC+HL+GFNVCNRY+ + YYQ NK FK+VD K EELNN+K+K+ + TP
Sbjct: 68 NACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTP 118
>sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)
sp|P59708|PM14_MOUSE Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)
Length = 125
Score = 155 bits (393), Expect = 3e-38
Identities = 69/110 (62%), Positives = 88/110 (80%)
Frame = +1
Query: 31 KLPPNVSRILMVSNLPYELRDDEMYDIFGKYGTIRQIRVGNTTENKGKAFVVYEDIYDAQ 210
+LPP V+RIL + NLPY++ +EMYDIFGKYG IRQIRVGNT E +G A+VVYEDI+DA+
Sbjct: 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 71
Query: 211 NACEHLTGFNVCNRYICISYYQPNKVFKKVDYTAKNEELNNLKSKFGIGT 360
NAC+HL+GFNVCNRY+ + YY N+ F+K+D K E+L LK K+GI T
Sbjct: 72 NACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein
Length = 138
Score = 149 bits (375), Expect = 4e-36
Identities = 68/131 (51%), Positives = 95/131 (72%)
Frame = +1
Query: 4 MAFSNKRISKLPPNVSRILMVSNLPYELRDDEMYDIFGKYGTIRQIRVGNTTENKGKAFV 183
MA R +KLPP V+RIL + NLPY++ +EMY+IFGK+G +RQIRVGNT E +G AFV
Sbjct: 3 MANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFV 62
Query: 184 VYEDIYDAQNACEHLTGFNVCNRYICISYYQPNKVFKKVDYTAKNEELNNLKSKFGIGTP 363
VYEDI+DA+ ACEHL+G+NV NRY+ + YYQ K +K++D +L ++K ++GIG
Sbjct: 63 VYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGIGGD 122
Query: 364 RNNVK*KVRVF 396
+ K K+ +F
Sbjct: 123 IDKEKEKLGLF 133
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein
Length = 124
Score = 138 bits (348), Expect = 5e-33
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +1
Query: 19 KRISKLPPNVSRILMVSNLPYELRDDEMYDIFGKYGTIRQIRVGNTTENKGKAFVVYEDI 198
K ++LPP V+R+L V NLP+ + +EMYDIFGKYG IRQIR+G KG AFVVYEDI
Sbjct: 8 KSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDI 67
Query: 199 YDAQNACEHLTGFNVCNRYICISYYQPNKVFKKVDYTAKNEELNNLKSKFGIGT 360
YDA+NA +HL+GFNV NRY+ + YYQ K+ KK D +E+ L+ K+G+ T
Sbjct: 68 YDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVST 121
>sp|O97018|SXL_CHRRU Sex-lethal protein homolog
Length = 307
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQIRVGN---TTENKGKAFVVYEDIYDAQNACEHL 228
L+V+ LP ++ D E+Y +F G I R+ T + G AFV + DAQNA + L
Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146
Query: 229 TGFNVCNRYICISYYQP--------NKVFKKVDYTAKNEELNNLKSKFGIGTPRNNVK*K 384
G V N+ + +SY +P N + T ++EL + K+G +N ++ K
Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 206
Query: 385 V 387
+
Sbjct: 207 L 207
Score = 41.6 bits (96), Expect = 8e-04
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQ---IRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L V+NLP + DDE+ IFGKYG I Q +R T + +G AFV + +AQ A L
Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232
>sp|O17310|SXL_MUSDO Sex-lethal protein homolog
Length = 324
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQIRVGN---TTENKGKAFVVYEDIYDAQNACEHL 228
L+V+ LP ++ D E+Y +F G I R+ T + G AFV + DAQNA + +
Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163
Query: 229 TGFNVCNRYICISYYQP--------NKVFKKVDYTAKNEELNNLKSKFGIGTPRNNVK*K 384
G V N+ + +SY +P N + T ++EL + K+G +N ++ K
Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 223
Query: 385 V 387
+
Sbjct: 224 L 224
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQ---IRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L V+NLP + DDE+ IFGKYG I Q +R T +G AFV + +AQ A L
Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISAL 249
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor 50 kDa
subunit) (U2 snRNP auxiliary factor large subunit)
Length = 416
Score = 48.9 bits (115), Expect = 5e-06
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Frame = +1
Query: 37 PPNVSRILMVSNLPYELRDDEMYDIF--------GKYGTIRQIRVGNTTENK-----GKA 177
PP L+ P ELRD+E Y+ KYG +R + + E GK
Sbjct: 315 PPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKV 374
Query: 178 FVVYEDIYDAQNACEHLTGFNVCNRYICISYYQPNKVFKK 297
FV + + D Q A + LTG +R + SY+ P+K ++
Sbjct: 375 FVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRR 414
Score = 33.1 bits (74), Expect = 0.28
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 25 ISKLPPNVSRILMVSNLPYELRDDEMYDI---FGKYGTIRQIRVGNTTENKGKAFVVYED 195
IS + P+ + + LP L DD++ ++ FGK ++ T +KG AF Y D
Sbjct: 198 ISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVD 257
Query: 196 IYDAQNACEHLTGFNVCNRYICI 264
+ + L G + ++ + +
Sbjct: 258 LSITDQSIAGLNGMQLGDKKLIV 280
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 48.1 bits (113), Expect = 8e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +1
Query: 49 SRILMVSNLPYELRDDEMYDIFGKYGTIRQIRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
SR + V NLP ++R+ E+ D+F KYG + QI + G AFV ++D DA++A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 229 TGFN 240
G++
Sbjct: 66 DGYD 69
>sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL)
Length = 348
Score = 48.1 bits (113), Expect = 8e-06
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIF---GKYGTIRQIRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L+V+ LP ++ D E+Y +F G T R +R T + G AFV + D+Q A + L
Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171
Query: 229 TGFNVCNRYICISYYQP--------NKVFKKVDYTAKNEELNNLKSKFGIGTPRNNVK*K 384
G V N+ + +SY +P N + T +++L+ + K+G+ +N ++ K
Sbjct: 172 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDK 231
Query: 385 V 387
+
Sbjct: 232 L 232
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQ---IRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L V+NLP + DD++ IFGKYG I Q +R T + +G AFV + +AQ A L
Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 257
>sp|P19339|SXL_DROME Sex-lethal protein
Length = 354
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIF---GKYGTIRQIRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L+V+ LP ++ D E+Y +F G T R +R T + G AFV + D+Q A + L
Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186
Query: 229 TGFNVCNRYICISYYQP--------NKVFKKVDYTAKNEELNNLKSKFGIGTPRNNVK*K 384
G V N+ + +SY +P N + T +++L+ + K+G +N ++ K
Sbjct: 187 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 246
Query: 385 V 387
+
Sbjct: 247 L 247
Score = 41.6 bits (96), Expect = 8e-04
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 LMVSNLPYELRDDEMYDIFGKYGTIRQ---IRVGNTTENKGKAFVVYEDIYDAQNACEHL 228
L V+NLP + DD++ IFGKYG+I Q +R T +G AFV Y +AQ A L
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,294,724
Number of Sequences: 369166
Number of extensions: 978234
Number of successful extensions: 3223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)