Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_C14
(883 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12107|CA1B_HUMAN Collagen alpha 1(XI) chain precursor 93 9e-19
sp|P20909|CA1B_RAT Collagen alpha 1(XI) chain precursor 92 2e-18
sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor 91 3e-18
sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor 87 5e-17
sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor 87 8e-17
sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor 83 9e-16
sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor 82 2e-15
sp|P11087|CO1A1_MOUSE Collagen alpha 1(I) chain precursor 79 1e-14
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 77 5e-14
sp|P18856|CAF1_EPHMU Collagen EMF1-alpha precursor (Fibrill... 77 8e-14
>sp|P12107|CA1B_HUMAN Collagen alpha 1(XI) chain precursor
Length = 1806
Score = 93.2 bits (230), Expect = 9e-19
Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 11/289 (3%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQS---------FGDINDALFEKV 201
GD G G PG PGPPG+V ++ P SS + +R T + D + +F +
Sbjct: 1525 GDSGLPGPPGPPGPPGEV-IQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSL 1583
Query: 202 DKITNKIKKLRFPTGLNKDSATRTCADIK-SHRKSPIDGSYYIDPNEGSGKDSIEVECIF 378
+ + I+ ++FP G + A RTC D++ SH P DG Y+IDPN+G DS +V C F
Sbjct: 1584 NSLKQDIEHMKFPMGTQTNPA-RTCKDLQLSHPDFP-DGEYWIDPNQGCSGDSFKVYCNF 1641
Query: 379 SEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVDHTQMNF 558
+ E TC+ K+ G+ P + +W + + G L D+ ++ QM F
Sbjct: 1642 TSGGE--TCIYPDKKSEGVRISSWPKEKPGSWFSEFK-RGKLLSYLDVEGNSINMVQMTF 1698
Query: 559 LRMQNSKSYQEIEFLCDQSVIYGD-SELSEENKFKFATVLMTHDFKSIDLSKGERLGPNE 735
L++ + + Q + C QS + D S S + +F LG N+
Sbjct: 1699 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRF-------------------LGSND 1739
Query: 736 GYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLETTELSMLPI 882
M N F + + YDGC R + ++ T ++ +PI
Sbjct: 1740 EEMS--YDNNPFIKTL------YDGCTSRKGYEKTVIEINTPKIDQVPI 1780
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNPP 120
PGD GD G PG PG PG + PP
Sbjct: 465 PGDPGDRGPPGRPGLPGADGLPGPP 489
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP 120
GD G+ G PG PGPPG PP
Sbjct: 1333 GDKGEDGDPGQPGPPGPSGEAGPP 1356
Score = 31.2 bits (69), Expect = 4.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNP 117
G+ G+ G GNPGPPG+ V P
Sbjct: 1252 GEKGEPGEAGNPGPPGEAGVGGP 1274
Score = 30.8 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Frame = -3
Query: 95 PGGPGFPGL-----PISPISPGKPRFPGGP---DGPKGP 3
PG PG G P+ P P PR P GP DGP+GP
Sbjct: 1203 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGP 1241
Score = 30.4 bits (67), Expect = 6.8
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISPGKPRFPGGPDGPKGP 3
P P G PG PG G P PG P+ P GP G KGP
Sbjct: 674 PPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-PQGPIGPPGEKGP 716
Score = 30.4 bits (67), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP 120
G+ GD G+PG PGP G+ PP
Sbjct: 1336 GEDGDPGQPGPPGPSGEAGPPGPP 1359
Score = 30.0 bits (66), Expect = 8.9
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNP-PEGSSG 135
PG G++G G PGPPGQ NP P+G G
Sbjct: 675 PGPKGNMGPQGEPGPPGQ--QGNPGPQGLPG 703
Score = 30.0 bits (66), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
G+ G +G PG+PGPPG++ P G G
Sbjct: 1306 GNPGPVGFPGDPGPPGEL----GPAGQDG 1330
>sp|P20909|CA1B_RAT Collagen alpha 1(XI) chain precursor
Length = 482
Score = 91.7 bits (226), Expect = 2e-18
Identities = 80/289 (27%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRA---------QSFGDINDALFEKV 201
GD G G PG PGPPG+V ++ P S + +R T + + D + +F +
Sbjct: 201 GDSGMPGPPGPPGPPGEV-IQPLPILSPKKTRRHTESIQADAGDNILDYSDGMEEIFGSL 259
Query: 202 DKITNKIKKLRFPTGLNKDSATRTCADIK-SHRKSPIDGSYYIDPNEGSGKDSIEVECIF 378
+ + I+ ++FP G + A RTC D++ SH P DG Y+IDPN+G DS +V C F
Sbjct: 260 NSLKQDIEHMKFPMGTQTNPA-RTCKDLQLSHPDFP-DGEYWIDPNQGCSGDSFKVYCNF 317
Query: 379 SEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVDHTQMNF 558
+ E TC+ K+ G+ P + +W + + G L D+ ++ QM F
Sbjct: 318 TAGGE--TCIYPDKKSEGVRLSSWPKEKPGSWYSEFK-RGKLLSYLDVEGNSINMVQMTF 374
Query: 559 LRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLSKGER-LGPNE 735
L++ S + Q + C QS + +D S K R LG N+
Sbjct: 375 LKLLTSSARQNFTYNCHQSTAW-------------------YDVLSGSYDKALRFLGSND 415
Query: 736 GYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLETTELSMLPI 882
M Y N ++ YDGC R + ++ T ++ +PI
Sbjct: 416 EEMS---YDNNP-----HIKALYDGCASRKGYEKTVIEINTPKIDQVPI 456
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP 120
GD G+ G PG PGPPG PP
Sbjct: 9 GDKGEDGDPGQPGPPGPSGEAGPP 32
Score = 30.4 bits (67), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP 120
G+ GD G+PG PGP G+ PP
Sbjct: 12 GEDGDPGQPGPPGPSGEAGPPGPP 35
>sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor
Length = 1804
Score = 91.3 bits (225), Expect = 3e-18
Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 11/289 (3%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRA---------QSFGDINDALFEKV 201
GD G G PG PGPPG+V ++ P S + +R T + + D + +F +
Sbjct: 1523 GDSGMPGPPGPPGPPGEV-IQPLPILSPKKTRRHTESIQGDAGDNILDYSDGMEEIFGSL 1581
Query: 202 DKITNKIKKLRFPTGLNKDSATRTCADIK-SHRKSPIDGSYYIDPNEGSGKDSIEVECIF 378
+ + I+ ++FP G + A RTC D++ SH P DG Y+IDPN+G DS +V C F
Sbjct: 1582 NSLKQDIEHMKFPMGTQTNPA-RTCKDLQLSHPDFP-DGEYWIDPNQGCSGDSFKVYCNF 1639
Query: 379 SEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVDHTQMNF 558
+ E TC+ K+ G+ P + +W + + G L D+ ++ QM F
Sbjct: 1640 TAGGE--TCIYPDKKSEGVRISSWPKEKPGSWYSEFK-RGKLLSYLDVEGNSINMVQMTF 1696
Query: 559 LRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLSKGER-LGPNE 735
L++ + + Q + C QS + +D S K R LG N+
Sbjct: 1697 LKLLTASARQNFTYNCHQSAAW-------------------YDVLSGSYDKALRFLGSND 1737
Query: 736 GYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLETTELSMLPI 882
M Y+N ++ YDGC R + ++ T ++ +PI
Sbjct: 1738 EEMS---YENN-----PHIKALYDGCASRKGYEKTVIEINTPKIDQVPI 1778
Score = 33.9 bits (76), Expect = 0.62
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPP 120
LPGD GD G PG PG PG + PP
Sbjct: 462 LPGDPGDRGPPGRPGLPGADGLPGPP 487
Score = 32.7 bits (73), Expect = 1.4
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISPGKPRFPGGPDGPKGP 3
P P G PG PG G P S PG P+ P GP G KGP
Sbjct: 672 PQGPKGNMGPQGEPGPPGQQGNPGSQGLPG-PQGPIGPPGEKGP 714
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP 120
GD G+ G PG PGPPG PP
Sbjct: 1331 GDKGEDGDPGQPGPPGPSGEAGPP 1354
Score = 31.2 bits (69), Expect = 4.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPP--------EGSSGR 138
G+ GD G+PG PGP G+ PP GS GR
Sbjct: 1334 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGASGSEGR 1371
Score = 30.8 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Frame = -3
Query: 95 PGGPGFPGL-----PISPISPGKPRFPGGP---DGPKGP 3
PG PG G P+ P P PR P GP DGP+GP
Sbjct: 1201 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGP 1239
Score = 30.0 bits (66), Expect = 8.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQ 99
G IG+ G PG PGPPG+
Sbjct: 977 GPIGERGHPGPPGPPGE 993
Score = 30.0 bits (66), Expect = 8.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQ 99
GD G+ G GNPGPPG+
Sbjct: 1250 GDKGEPGEAGNPGPPGE 1266
>sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor
Length = 1460
Score = 87.4 bits (215), Expect = 5e-17
Identities = 84/300 (28%), Positives = 123/300 (41%), Gaps = 22/300 (7%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGS----------------SGRYKRSTRAQSFGDIN 180
GD G +G PG PGPPG PP G GRY R+ A D +
Sbjct: 1168 GDAGPVGPPGPPGPPGPP---GPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRD 1224
Query: 181 DALFEKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSI 360
+ + ++ +I+ +R P G K+ A RTC D+K G Y+IDPN+G D+I
Sbjct: 1225 LEVDTTLKSLSQQIENIRSPEGSRKNPA-RTCRDLKMCHSDWKSGEYWIDPNQGCNLDAI 1283
Query: 361 EVECIFSEEDEVKTCLSSVKQLGGLYNY---KKPMKGETNWQNSLRLEGALTRAPDLHSM 531
+V C + +TC+ + N+ K P + W +G S
Sbjct: 1284 KVFC---NMETGETCVYPTQPQVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSD 1340
Query: 532 YVD-HTQMNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLS 708
D Q+ FLR+ ++++ Q I + C SV Y D + K A +L
Sbjct: 1341 PADVAIQLTFLRLMSTEASQNITYHCKNSVAYMD---QQTGNLKKALLLQ---------- 1387
Query: 709 KGERLGPNEGYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLE--TTELSMLPI 882
G NE + G + F ++ YDGC T G+ K +E TT+ S LPI
Sbjct: 1388 -----GSNE------IEIRAEGNSRFTYSVTYDGCTSHT-GAWGKTVIEYKTTKTSRLPI 1435
Score = 32.7 bits (73), Expect = 1.4
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Frame = -3
Query: 131 DDPSGGFLTLTCPGGPGFP-GLPISPISPGKPRFPG-----------GPDGPKGP 3
D+ S G +++ P GP P GLP P +PG F G GP GP+GP
Sbjct: 164 DEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 218
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 92 GGPGFPGLPISPISPGKPRFPGGPDGPKG 6
G PGFPG P P+ P GP GPKG
Sbjct: 403 GAPGFPGAR----GPSGPQGPSGPPGPKG 427
Score = 32.0 bits (71), Expect = 2.3
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 95 PGGPGFPGLPISPISPGKPRFPG--GPDGPKGP 3
PG G PG P PG FPG G GPKGP
Sbjct: 471 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGP 503
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQ 162
PG+ GD G G PGP G ++ PP + KR R +
Sbjct: 435 PGNKGDTGAKGEPGPTG---IQGPPGPAGEEGKRGARGE 470
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -3
Query: 95 PGGPGFPGL--PISPISPGKPRFPGGPDGPKGP 3
PG PG PG P+ P R GP GP GP
Sbjct: 1041 PGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGP 1073
Score = 31.2 bits (69), Expect = 4.0
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISPG---KPRFPG-----GPDGPKGP 3
P P+G PG G PG + +PG P FPG GP GP GP
Sbjct: 371 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGP 422
Score = 31.2 bits (69), Expect = 4.0
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPG 96
PG G GRPG PGPPG
Sbjct: 552 PGPAGQDGRPGPPGPPG 568
Score = 30.4 bits (67), Expect = 6.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
LPG G+ G PG PGP G+ + P G+SG
Sbjct: 959 LPGQRGERGFPGLPGPSGE-PGKQGPSGTSG 988
Score = 30.4 bits (67), Expect = 6.8
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 17/47 (36%)
Frame = -3
Query: 95 PGGPGFPGL-----------------PISPISPGKPRFPGGPDGPKG 6
PG PG PG P PI P R P GP GP+G
Sbjct: 1044 PGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGARGPAGPQGPRG 1090
Score = 30.0 bits (66), Expect = 8.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 92 GGPGFPGLPISPISPGKPRFPGGPDGPKGP 3
G PG G P P + G P P GP GP GP
Sbjct: 397 GAPGIAGAPGFPGARG-PSGPQGPSGPPGP 425
Score = 30.0 bits (66), Expect = 8.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 125 PSGGFLTLTCPGGPGFPGLPISPISPGKPRFPGGPDGPKGP 3
P G + PG GFPG + P P GP GP GP
Sbjct: 857 PKGARGSAGPPGATGFPG-AAGRVGPPGPSGNAGPPGPPGP 896
>sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor
Length = 1838
Score = 86.7 bits (213), Expect = 8e-17
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 12/214 (5%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQS------------FGDINDALF 192
G+ G G PG PGPPG+V P + S R +R+ A + D + +F
Sbjct: 1555 GEAGHPGPPGPPGPPGEVIQPLPIQAS--RTRRNIDASQLLDDGNGENYVDYADGMEEIF 1612
Query: 193 EKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSIEVEC 372
++ + +I++++ P G ++ A RTC D++ DG Y++DPN+G +DS +V C
Sbjct: 1613 GSLNSLKLEIEQMKRPLGTQQNPA-RTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYC 1671
Query: 373 IFSEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVDHTQM 552
F+ TC+ K+ G P + +W + + G L D V QM
Sbjct: 1672 NFTAGG--STCVFPDKKSEGARITSWPKENPGSWFSEFK-RGKLLSYVDAEGNPVGVVQM 1728
Query: 553 NFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENK 654
FLR+ ++ ++Q + + C QSV + D+ +K
Sbjct: 1729 TFLRLLSASAHQNVTYHCYQSVAWQDAATGSYDK 1762
Score = 34.7 bits (78), Expect = 0.36
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 125 PSGGFLTLTCPGGPGFPGLPISPISPGKPRFPG-----GPDGPKGP 3
P G L PG PG PG P PGK PG GP GP+GP
Sbjct: 740 PPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Score = 32.3 bits (72), Expect = 1.8
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISPGKPRFPGGPDGPKG 6
P P G PG GFPG P P PG P G DGP G
Sbjct: 1325 PKGPPGDDGPKGSPGPVGFPGDPGPPGEPG----PAGQDGPPG 1363
Score = 32.3 bits (72), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPP-----EGSSG 135
+PG +G+ G PG+PGP G PP +G SG
Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSG 1477
Score = 31.6 bits (70), Expect = 3.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQSFG 171
PG G G PG+ GP G V+ PP G +G+ R RA S G
Sbjct: 576 PGSGGLKGEPGDVGPQGPRGVQGPP-GPAGKPGRRGRAGSDG 616
Score = 31.2 bits (69), Expect = 4.0
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 95 PGGPGFPGLPISPISPGKPRFPG--GPDGPKGP 3
PG PG GL P G+ PG GPDGP GP
Sbjct: 1431 PGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGP 1463
Score = 30.8 bits (68), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
G+ GD+G+ G PGPPG P G SG
Sbjct: 1240 GETGDVGQMGPPGPPG-------PRGPSG 1261
Score = 30.0 bits (66), Expect = 8.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQ 99
PG G++G G PGPPGQ
Sbjct: 705 PGPKGNVGPQGEPGPPGQ 722
Score = 30.0 bits (66), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPP 120
+PG G G PG GPPG+ + PP
Sbjct: 755 MPGADGPPGHPGKEGPPGEKGGQGPP 780
Score = 30.0 bits (66), Expect = 8.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
LPG +G +G GN GPPG P GS G
Sbjct: 1064 LPGPVGALGLKGNEGPPGP----PGPAGSPG 1090
>sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor
Length = 1464
Score = 83.2 bits (204), Expect = 9e-16
Identities = 84/295 (28%), Positives = 122/295 (41%), Gaps = 17/295 (5%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVK----------VRNPPEGSS---GRYKRSTRAQSFGDINDAL 189
GD G +G PG PGPPG + PP+ + GRY R+ A D + +
Sbjct: 1172 GDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEV 1231
Query: 190 FEKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSIEVE 369
+ ++ +I+ +R P G K+ A RTC D+K G Y+IDPN+G D+I+V
Sbjct: 1232 DTTLKSLSQQIENIRSPEGSRKNPA-RTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 1290
Query: 370 C-IFSEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVD-H 543
C + + E V SV Q Y K P W +G S D
Sbjct: 1291 CNMETGETCVYPTQPSVAQ-KNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVA 1349
Query: 544 TQMNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLSKGERL 723
Q+ FLR+ ++++ Q I + C SV Y D + T + K L KG
Sbjct: 1350 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQ--------------TGNLKKALLLKG--- 1392
Query: 724 GPNEGYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLE--TTELSMLPI 882
+ G + F ++ DGC T G+ K +E TT+ S LPI
Sbjct: 1393 -------SNEIEIRAEGNSRFTYSVTVDGCTSHT-GAWGKTVIEYKTTKTSRLPI 1439
Score = 35.0 bits (79), Expect = 0.28
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -3
Query: 92 GGPGFPGLPISPISPGKPRFPGGPDGPKG 6
G PGFPG P P+ PGGP GPKG
Sbjct: 407 GAPGFPGAR----GPSGPQGPGGPPGPKG 431
Score = 33.5 bits (75), Expect = 0.80
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 LLYLPDDPSGGFLTLTCPGGPGFP-GLPISPISPGKPRFPG-----------GPDGPKGP 3
L Y D+ S G +++ P GP P GLP P +PG F G GP GP+GP
Sbjct: 163 LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 222
Score = 32.7 bits (73), Expect = 1.4
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISP---GKPRFPG--GPDGPKGP 3
P P+G PG G PG + +P G P FPG GP GP+GP
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Score = 32.0 bits (71), Expect = 2.3
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 95 PGGPGFPGLPISPISPGKPRFPG--GPDGPKGP 3
PG G PG P PG FPG G GPKGP
Sbjct: 475 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGP 507
Score = 31.2 bits (69), Expect = 4.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQ 162
PG GD G G PGP G V+ PP + KR R +
Sbjct: 439 PGSKGDTGAKGEPGPVG---VQGPPGPAGEEGKRGARGE 474
Score = 31.2 bits (69), Expect = 4.0
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPG 96
PG G GRPG PGPPG
Sbjct: 556 PGPAGQDGRPGPPGPPG 572
Score = 31.2 bits (69), Expect = 4.0
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 17/47 (36%)
Frame = -3
Query: 95 PGGPGFPGL-----------------PISPISPGKPRFPGGPDGPKG 6
PG PG PG P P+ P R P GP GP+G
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPAGARGPAGPQGPRG 1094
Score = 30.4 bits (67), Expect = 6.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
LPG G+ G PG PGP G+ + P G+SG
Sbjct: 963 LPGQRGERGFPGLPGPSGE-PGKQGPSGASG 992
>sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor
Length = 1453
Score = 82.0 bits (201), Expect = 2e-15
Identities = 81/300 (27%), Positives = 123/300 (41%), Gaps = 22/300 (7%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGS----------------SGRYKRSTRAQSFGDIN 180
G++G +G PG PGPPG PP G GRY R+ A D +
Sbjct: 1161 GEVGPVGPPGPPGPPGPP---GPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVMRDRD 1217
Query: 181 DALFEKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSI 360
+ + ++ +I+ +R P G K+ A RTC D+K G Y+IDPN+G D+I
Sbjct: 1218 LEVDTTLKSLSQQIENIRSPEGTRKNPA-RTCRDLKMCHGDWKSGEYWIDPNQGCNLDAI 1276
Query: 361 EVECIFSEEDEVKTCLSSVKQLGGLYNY---KKPMKGETNWQNSLRLEGALTRAPDLHSM 531
+V C + +TC+ + N+ K P + + W +G S
Sbjct: 1277 KVYC---NMETGETCVYPTQATIAQKNWYLSKNPKEKKHVWFGETMSDGFQFEYGGEGSN 1333
Query: 532 YVD-HTQMNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLS 708
D Q+ FLR+ ++++ Q + + C SV Y D + K A +L
Sbjct: 1334 PADVAIQLTFLRLMSTEATQNVTYHCKNSVAYMD---HDTGNLKKALLLQ---------- 1380
Query: 709 KGERLGPNEGYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLE--TTELSMLPI 882
G NE + G + F + DGC T G+ K +E TT+ S LPI
Sbjct: 1381 -----GANE------IEIRAEGNSRFTYGVTEDGCTSHT-GAWGKTVIEYKTTKTSRLPI 1428
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISP---GKPRFPG--GPDGPKGP 3
P P+G PG G PG + +P G P FPG GP GP+GP
Sbjct: 364 PPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGP 412
Score = 32.0 bits (71), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYKRSTRAQ 162
PG+ GD G G PGP G V+ PP + KR R +
Sbjct: 428 PGNKGDTGAKGEPGPAG---VQGPPGPAGEEGKRGARGE 463
Score = 30.4 bits (67), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 46 PGDIGDIGRPGNPGPPGQVKVRNP--PEGSSGR 138
PG G+IG PG PGP G+ + P G +GR
Sbjct: 875 PGPSGNIGLPGPPGPAGKZGSKGPRGETGPAGR 907
Score = 30.4 bits (67), Expect = 6.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
LPG G+ G PG PGP G+ + P G+SG
Sbjct: 952 LPGQRGERGFPGLPGPSGE-PGKQGPSGASG 981
Score = 30.0 bits (66), Expect = 8.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 95 PGGPGFPGLPISPISPGKPRFPGGPDGPKG 6
PG PG G+P P PG P GP GP G
Sbjct: 119 PGPPGRDGIPGQPGLPGPP----GPPGPPG 144
>sp|P11087|CO1A1_MOUSE Collagen alpha 1(I) chain precursor
Length = 1453
Score = 79.3 bits (194), Expect = 1e-14
Identities = 85/298 (28%), Positives = 124/298 (41%), Gaps = 20/298 (6%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVK----------VRNPPEGSS---GRYKRSTRAQSFGDINDAL 189
GD G G PG PGPPG + PP+ S RY R+ A D + A+
Sbjct: 1161 GDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQDGDRYYRADDANVVRDRDLAV 1220
Query: 190 FEKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSIEVE 369
+ ++ +I+ +R P G K+ A RTC D+K G Y+IDPN+G D+I+V
Sbjct: 1221 DATLKSLSQQIENIRSPEGSRKNPA-RTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVY 1279
Query: 370 CIFSEEDEVKTCL----SSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYV 537
C + +TC+ SV Q Y P + + W +G S
Sbjct: 1280 C---NMETGQTCVFPTQPSVPQ-KNWYISPNPKEKKHVWFGESMTDGFPFEYGSEGSDPT 1335
Query: 538 D-HTQMNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLSKG 714
D Q+ FLR+ ++++ Q I + C SV Y D + K L+ I+L +G
Sbjct: 1336 DVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKK-----ALLLQGSNEIEL-RG 1389
Query: 715 ERLGPNEGYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKFKLE--TTELSMLPI 882
E G + F + DGC T G+ K +E TT+ S LPI
Sbjct: 1390 E------------------GNSRFTYSRVVDGCTSHT-GTWGKTVIEYKTTKTSRLPI 1428
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 92 GGPGFPGLPISPISPGKPRFPGGPDGPKG 6
G PGFPG P P+ P GP GPKG
Sbjct: 396 GAPGFPGAR----GPSGPQGPSGPPGPKG 420
Score = 32.0 bits (71), Expect = 2.3
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 95 PGGPGFPGLPISPISPGKPRFPG--GPDGPKGP 3
PG G PG P PG FPG G GPKGP
Sbjct: 464 PGPSGLPGPPGERGGPGSRGFPGADGVAGPKGP 496
Score = 31.6 bits (70), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 43 LPGDIGDIGRPGNPGPPGQVKVRNPPEGSSG 135
LPG G+ G PG PGP G+ + P GSSG
Sbjct: 952 LPGQRGERGFPGLPGPSGE-PGKQGPSGSSG 981
Score = 31.6 bits (70), Expect = 3.1
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 17/47 (36%)
Frame = -3
Query: 95 PGGPGFPGL-----------------PISPISPGKPRFPGGPDGPKG 6
PG PG PG P PI P R P GP GP+G
Sbjct: 1037 PGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRG 1083
Score = 31.2 bits (69), Expect = 4.0
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Frame = -3
Query: 134 PDDPSGGFLTLTCPGGPGFPGLPISPISPG---KPRFPG-----GPDGPKGP 3
P P+G PG G PG + +PG P FPG GP GP GP
Sbjct: 364 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGP 415
Score = 30.0 bits (66), Expect = 8.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 92 GGPGFPGLPISPISPGKPRFPGGPDGPKGP 3
G PG G P P + G P P GP GP GP
Sbjct: 390 GAPGIAGAPGFPGARG-PSGPQGPSGPPGP 418
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 77.4 bits (189), Expect = 5e-14
Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPGQVKVRNPPEGSSGRYK--------RSTRAQSFGDINDALFE--- 195
G G G PG PGPPG PP S G Y R+ + +S + +E
Sbjct: 244 GSQGPAGPPGPPGPPG------PPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDA 297
Query: 196 KVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSIEVECI 375
+ + N+I+ L P G K+ A RTC D++ G Y+IDPN+G D+I+V C
Sbjct: 298 TLKSLNNQIETLLTPEGSRKNPA-RTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCD 356
Query: 376 FSEEDEVKTCLSSVKQLGGLYNYKKPMK-------GET---NWQNSLRLEGALTRAPDLH 525
FS + TC+ + + + N+ K K GET Q +EG ++
Sbjct: 357 FSTGE---TCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEM--- 410
Query: 526 SMYVDHTQMNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENK 654
TQ+ F+R+ + + Q I + C S+ Y D E NK
Sbjct: 411 -----ATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLNK 448
>sp|P18856|CAF1_EPHMU Collagen EMF1-alpha precursor (Fibrillar collagen)
Length = 547
Score = 76.6 bits (187), Expect = 8e-14
Identities = 77/292 (26%), Positives = 114/292 (39%), Gaps = 14/292 (4%)
Frame = +1
Query: 49 GDIGDIGRPGNPGPPG-------------QVKVRNPPEGSSGRYKRSTRAQSFGDINDAL 189
GD G G G PGPPG Q R+P GS + R ++ D+N
Sbjct: 290 GDRGSTGPAGPPGPPGPTGGGIILVPVNDQNPTRSPVSGSV--FYRGQAEET--DVNLGS 345
Query: 190 FEKVDKITNKIKKLRFPTGLNKDSATRTCADIKSHRKSPIDGSYYIDPNEGSGKDSIEVE 369
V ++ K++ L+ PTG KDS R+C D+ S DG Y+IDPN G D+++V
Sbjct: 346 VADVIELHKKLQHLKSPTG-TKDSPARSCHDLFLEDNSTSDGYYWIDPNGGCIGDAVKVF 404
Query: 370 CIFSEEDEVKTCLSSVKQLGGLYNYKKPMKGETNWQNSLRLEGALTRAPDLHSMYVDHTQ 549
C F+ + +TC+S+ K G L K G + W + + LT + +Q
Sbjct: 405 CNFTGGVQ-QTCISATKNAGDL----KSWSGHSIWFSDMLGGFKLT-------YDISRSQ 452
Query: 550 MNFLRMQNSKSYQEIEFLCDQSVIYGDSELSEENKFKFATVLMTHDFKSIDLSKGERLGP 729
+ F+R + + Q + C S A + T D K I +K
Sbjct: 453 LQFIRAASRHAVQSFTYKCRNSAA--------------AVIFRTQDNKEIAANK------ 492
Query: 730 NEGYMDKRVYKNEFGRAIFNVTIEYDGCMYRTPGSSSKF-KLETTELSMLPI 882
+ YDGC R + F +ET + LPI
Sbjct: 493 ----------------------VTYDGCKSRPSVPDAAFVAVETKRVEQLPI 522
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,497,021
Number of Sequences: 369166
Number of extensions: 1970192
Number of successful extensions: 17487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14305
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)