Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_C12
(869 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 87 6e-17
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 80 6e-15
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 77 6e-14
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 74 5e-13
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 72 2e-12
sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID ... 71 3e-12
sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID ... 71 4e-12
sp|P74442|Y143_SYNY3 Hypothetical WD-repeat protein slr0143 70 1e-11
sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog 69 1e-11
sp|O43017|SWD3_SCHPO Set1 complex component swd3 (Set1C com... 69 2e-11
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 87.0 bits (214), Expect = 6e-17
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 14/241 (5%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKK--ASNVK 185
+ H+ V +++ + D K + S + +++WRI + K+ + H+ V +S+ K
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLK-GHNDSVWDVNFSSDGK 1294
Query: 186 SVVYVAHMET------------AMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKY 329
++ + T H+ V + D S+S D T +W
Sbjct: 1295 AIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLI 1354
Query: 330 TRKQIMFANTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDI 509
+ +++ N+ V + D I T+G D I W DGSL++ L G+++ + G+
Sbjct: 1355 SPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKA--IYGISF 1412
Query: 510 TSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYF 689
T GD+ + DK VK+W+ +G +GH + ++ SPD + + + S D +
Sbjct: 1413 TPQGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKL 1472
Query: 690 W 692
W
Sbjct: 1473 W 1473
Score = 78.6 bits (192), Expect = 2e-14
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 15/242 (6%)
Frame = +3
Query: 15 AHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEE---CKVSQPNSIPHS-----HGVRKK 170
A GV AV+ D I + G +G +++W ++ K N + G
Sbjct: 1361 AGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIA 1420
Query: 171 ASNVKSVVYVAHMET--AMKE---HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTR 335
++N V + + A+K H N V+ + + D S+S D T +W +
Sbjct: 1421 SANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKF 1480
Query: 336 KQIMFANT--LFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDI 509
K+ + +T +F V + PD I ++ D+ I W+ + G+LI+ L + + V ++
Sbjct: 1481 KKTLKGHTDEVF-WVSFSPDGKIIASASADKTIRLWDSFSGNLIKSLP-AHNDLVYSVNF 1538
Query: 510 TSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYF 689
DG + + DK VK+W+ ++G + H GHS + SPD + I + SED +
Sbjct: 1539 NPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKI 1598
Query: 690 WK 695
W+
Sbjct: 1599 WQ 1600
Score = 72.4 bits (176), Expect = 2e-12
Identities = 42/173 (24%), Positives = 75/173 (43%)
Frame = +3
Query: 174 SNVKSVVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFA 353
+ ++ ++ ++ H + V I +++D S S D T +W + +
Sbjct: 1053 TTLQQALFEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRTLNGH 1112
Query: 354 NTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFV 533
V + PD I + G+D+ I W+ DG+L++ + G +VN + + DG
Sbjct: 1113 EDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQ-TVNNVYFSPDGKNLA 1171
Query: 534 TGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
+ D +K+W G + GHS + +R SPD Q I SED + W
Sbjct: 1172 SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLW 1224
Score = 70.5 bits (171), Expect = 6e-12
Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 19/251 (7%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIE-----------ECKVSQPNSIPHSHG 158
+ H+ V +V+ + D + I SGG + +++W+ E V+ P
Sbjct: 1110 NGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKN 1169
Query: 159 VRKKASNVKSVVY---VAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWC---- 317
+ +S+ ++ + + H+ V +R + D + S D T +W
Sbjct: 1170 LASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDG 1229
Query: 318 -LIKYTRKQIMFANTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSV 494
L+K + N+L + PD + ++ D+ I W + DG L++ L+G + SV
Sbjct: 1230 KLLKTLNGHQDWVNSL----SFSPDGKTLASASADKTIKLWRIADGKLVKTLKG-HNDSV 1284
Query: 495 NGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSED 674
++ +SDG + D +K+W G GHS + + PD +I + S D
Sbjct: 1285 WDVNFSSDGKAIASASRDNTIKLWN-RHGIELETFTGHSGGVYAVNFLPDSNIIASASLD 1343
Query: 675 GAIYFWKFPSV 707
I W+ P +
Sbjct: 1344 NTIRLWQRPLI 1354
Score = 70.1 bits (170), Expect = 8e-12
Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 17/244 (6%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIE----------ECKVSQPNSIPHSHGV 161
+ HK GV +++ + D + I SG + +++W + E V + P +
Sbjct: 1069 EGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRTLNGHEDAVYSVSFSPDGQTI 1128
Query: 162 RKKASNVKSVVYVAHMETAMKE---HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYT 332
S+ ++ T +K H V+ + + D S+S+D + +W T
Sbjct: 1129 ASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLW---DTT 1185
Query: 333 RKQIMFANTLFRC----VCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNG 500
Q++ T V + PD I D+ + W DG L++ L G + VN
Sbjct: 1186 SGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDW-VNS 1244
Query: 501 MDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGA 680
+ + DG + DK +K+W+ +G + GH+ + + S D + I + S D
Sbjct: 1245 LSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNT 1304
Query: 681 IYFW 692
I W
Sbjct: 1305 IKLW 1308
Score = 69.3 bits (168), Expect = 1e-11
Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 16/254 (6%)
Frame = +3
Query: 24 KGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRK-----------K 170
K + ++ T I S + V++WR+ + K + I H + V K
Sbjct: 1405 KAIYGISFTPQGDLIASANADKTVKIWRVRDGKALK-TLIGHDNEVNKVNFSPDGKTLAS 1463
Query: 171 ASNVKSV----VYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTR- 335
AS +V V + +K H + V + + D S+SAD T +W
Sbjct: 1464 ASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI 1523
Query: 336 KQIMFANTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITS 515
K + N L V + PD + ++ D+ + W +DG L+ G S V +
Sbjct: 1524 KSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSG-HSNVVYSSSFSP 1582
Query: 516 DGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFWK 695
DG + +DK VK+W+ + +T + H + SPD + + + S D W+
Sbjct: 1583 DGRYIASASEDKTVKIWQIDGHLLTTLP-QHQAGVMSAIFSPDGKTLISGSLDTTTKIWR 1641
Query: 696 FPSV*LKEKILLTL 737
F S K + TL
Sbjct: 1642 FDSQQAKTSQMNTL 1655
Score = 58.5 bits (140), Expect = 2e-08
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +3
Query: 396 QIITSGT-DRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKY 572
Q I SG+ D+ I W DG L R L G +V + + DG +GG DK +K+W+
Sbjct: 1085 QTIASGSLDKTIKLWS-RDGRLFRTLNGHED-AVYSVSFSPDGQTIASGGSDKTIKLWQT 1142
Query: 573 NEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFWKFPSV*LKEKILLTL 737
++G + GH + + SPD + + + S D +I W S ++L+TL
Sbjct: 1143 SDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTS----GQLLMTL 1193
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 80.5 bits (197), Expect = 6e-15
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANTLF-RCVCWRPDECQII 404
H + V + + D S+S D T +W + T Q + +T + RCV + PD +
Sbjct: 725 HEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLA 784
Query: 405 TSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGF 584
+S D I W+V G +R L+ S +G V + ++DG +G D+ +K+W Y+ G
Sbjct: 785 SSAADHTIKLWDVSQGKCLRTLK-SHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGE 843
Query: 585 VTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
+GH+ + + SPD +++ + S D I W
Sbjct: 844 CLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLW 879
Score = 68.6 bits (166), Expect = 2e-11
Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 16/243 (6%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQP---------NSIPHSHGVR 164
+ H + +A + D + + S + VR+W I + Q + H G
Sbjct: 975 EGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKI 1034
Query: 165 KKASNVKSVVYVAHMETA-----MKEHANAVSCIRMNKDDTQCVSSSADGTCIIW--CLI 323
+ V + ++ T + EH++ + + + D S+SAD + +W C
Sbjct: 1035 IATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTG 1094
Query: 324 KYTRKQIMFANTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGM 503
+ +N ++ + + P+ I T TD+ + W+ G ++ L G + V +
Sbjct: 1095 RCVGILRGHSNRVYSAI-FSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTG-HTNWVFDI 1152
Query: 504 DITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAI 683
+ DG I + D+ V++W N G H+ +GH+ ++ + SPD +++ + S+D +
Sbjct: 1153 AFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTV 1212
Query: 684 YFW 692
W
Sbjct: 1213 RIW 1215
Score = 62.4 bits (150), Expect = 2e-09
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 3/229 (1%)
Frame = +3
Query: 15 AHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIE--ECKVSQPNSIPHSHGVRKKASNVKS 188
+H V +VA ++D + + SG G+ +++W EC +K+
Sbjct: 808 SHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGEC--------------------LKT 847
Query: 189 VVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANTLFR 368
+ H N+V I + D VS S D T +W + + + +T
Sbjct: 848 YI----------GHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEV 897
Query: 369 C-VCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGD 545
C V + PD + D+ + W G ++ G+ ++ + + D I +G +
Sbjct: 898 CSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWAL-PVAFSPDRQILASGSN 956
Query: 546 DKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
DK VK+W + G GH+ I + SPD Q + + S D ++ W
Sbjct: 957 DKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLW 1005
Score = 50.1 bits (118), Expect = 8e-06
Identities = 29/103 (28%), Positives = 45/103 (43%)
Frame = +3
Query: 384 PDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKV 563
P+ + T TD + WEV G L+ G S V + + DG+I + G D+ VK+
Sbjct: 652 PEGQLLATCDTDCHVRVWEVKSGKLLLICRG-HSNWVRFVVFSPDGEILASCGADENVKL 710
Query: 564 WKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
W +G GH + + PD + + + S D I W
Sbjct: 711 WSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLW 753
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIW------CLIKYTRKQIMFANTLFRCVCWRPD 389
H+N V + + D S AD +W C+ T + + +F V + PD
Sbjct: 683 HSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHE----HEVFS-VAFHPD 737
Query: 390 ECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWK 569
+ ++ D+ I W++ DG+ ++ L G + V + + DG+ + D +K+W
Sbjct: 738 GETLASASGDKTIKLWDIQDGTCLQTLTG-HTDWVRCVAFSPDGNTLASSAADHTIKLWD 796
Query: 570 YNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFWKF 698
++G H+ + + S D Q + + S D I W +
Sbjct: 797 VSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNY 839
Score = 35.0 bits (79), Expect = 0.27
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Frame = +3
Query: 219 MKEHANAVSCIRMNKDDTQCVSSSADGTCIIW------CLIKYTRKQIMFANTLFRCVCW 380
++ H+N V + + + S D T IW CL T N +F + +
Sbjct: 1100 LRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGH----TNWVFD-IAF 1154
Query: 381 RPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVK 560
PD + ++ D+ + W+V G G + V+ + + DG++ +G D+ V+
Sbjct: 1155 SPDGKILASASHDQTVRIWDVNTGKCHHICIG-HTHLVSSVAFSPDGEVVASGSQDQTVR 1213
Query: 561 VWKYNEG 581
+W G
Sbjct: 1214 IWNVKTG 1220
Score = 33.9 bits (76), Expect = 0.60
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 486 GSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTV 665
G++ + +G + T D V+VW+ G + + GHS + + SPD +++ +
Sbjct: 643 GNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASC 702
Query: 666 SEDGAIYFW 692
D + W
Sbjct: 703 GADENVKLW 711
Score = 32.7 bits (73), Expect = 1.3
Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 18/183 (9%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKAS----NVK 185
H + +A + D + + S + VR+W +C + I H R ++ N +
Sbjct: 1061 HSDKILGMAWSPDGQLLASASADQSVRLW---DCCTGRCVGILRGHSNRVYSAIFSPNGE 1117
Query: 186 SVVYVAHMETA-------------MKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIK 326
+ + +T + H N V I + D S+S D T IW +
Sbjct: 1118 IIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177
Query: 327 YTRKQIMFANT-LFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGM 503
I +T L V + PD + + D+ + W V G ++ L R GM
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQILRAKR--LYEGM 1235
Query: 504 DIT 512
+IT
Sbjct: 1236 NIT 1238
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 77.0 bits (188), Expect = 6e-14
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 15/244 (6%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECK--------VSQPNSI---PHSHGVR 164
H V AVA + D + SG G+ VR+W I K S NS+ P +
Sbjct: 1157 HTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLA 1216
Query: 165 KKASNVKSVVYVAHMETAM---KEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTR 335
+S+ ++ + + + H + V+ + N D + S S+D T +W +
Sbjct: 1217 SGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC 1276
Query: 336 KQIMFANTLF-RCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDIT 512
+T + V + PD + + D+ + WE+ + +G S V+ + +
Sbjct: 1277 LHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW-VSSVTFS 1335
Query: 513 SDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
DG + +G DD+ V++W + G + LGH+ + + SPD ++ + S D + W
Sbjct: 1336 PDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLW 1395
Query: 693 KFPS 704
S
Sbjct: 1396 SISS 1399
Score = 69.3 bits (168), Expect = 1e-11
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 21/261 (8%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECK---------------VSQPNSIPHS 152
H V +V + D K + SG + VR+W I + V PNS+ +
Sbjct: 905 HNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLA 964
Query: 153 HGVRKKASNVKSV-----VYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWC 317
G + + + +Y+ + H V + N D + + S D T +W
Sbjct: 965 SGSSDQTVRLWDISSGECLYI------FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWD 1018
Query: 318 LIKYTRKQIMFANT-LFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSV 494
+ I +T R V + D + + D+ + W++ G+ + L+G S V
Sbjct: 1019 ISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTS-CV 1077
Query: 495 NGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSED 674
+ + DG + +GGDD+IV++W + G + G++ + L SP+ + S D
Sbjct: 1078 RSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSD 1137
Query: 675 GAIYFWKFPSV*LKEKILLTL 737
+ W S +K L TL
Sbjct: 1138 QIVRLWDISS----KKCLYTL 1154
Score = 69.3 bits (168), Expect = 1e-11
Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 16/249 (6%)
Frame = +3
Query: 6 INDAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECK---------------VSQPNS 140
I H V +V D + SG + VR+W I K V P+
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254
Query: 141 IPHSHGVRKKASNVKSVVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCL 320
+ G K + + + T + H N V+ + N D + S S D T +W +
Sbjct: 1255 SMLASGSSDKTVRLWDISSSKCLHT-FQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEI 1313
Query: 321 IKYTRKQIMFANTLF-RCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVN 497
+T + V + PD + + D+ + W + G + G + V
Sbjct: 1314 SSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLG-HTNWVG 1372
Query: 498 GMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDG 677
+ + DG I +G D+ V++W + G + GH+ + + SPD L+ + S+D
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQ 1432
Query: 678 AIYFWKFPS 704
+ W S
Sbjct: 1433 TVRLWNISS 1441
Score = 67.8 bits (164), Expect = 4e-11
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 1/226 (0%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKASNVKSVVY 197
H V +VA D + SG G+ VR+W I K
Sbjct: 1283 HTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLH---------------------- 1320
Query: 198 VAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANTLF-RCV 374
+ H + VS + + D T S S D T +W + +T + V
Sbjct: 1321 ------TFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSV 1374
Query: 375 CWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKI 554
+ PD + + D+ + W + G + L+G + V + + DG + +G DD+
Sbjct: 1375 IFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNW-VGSIVFSPDGTLLASGSDDQT 1433
Query: 555 VKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
V++W + G + GH + + S D ++ + S+D I W
Sbjct: 1434 VRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
Score = 60.1 bits (144), Expect = 8e-09
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 1/234 (0%)
Frame = +3
Query: 6 INDAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKASNVK 185
I H V +VA D + +G G+ VR+W I SQ I H S V+
Sbjct: 985 IFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISS---SQCFYIFQGH-----TSCVR 1036
Query: 186 SVVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANT-L 362
SVV+ + D S S D T +W + + +T
Sbjct: 1037 SVVF--------------------SSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSC 1076
Query: 363 FRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGG 542
R V + PD + + G D+ + W++ G+ + L+G S V + + +G G
Sbjct: 1077 VRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSW-VRFLVFSPNGVTLANGS 1135
Query: 543 DDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFWKFPS 704
D+IV++W + + GH+ + + SPD + + S D + W S
Sbjct: 1136 SDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISS 1189
Score = 50.8 bits (120), Expect = 5e-06
Identities = 27/111 (24%), Positives = 49/111 (44%)
Frame = +3
Query: 372 VCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDK 551
V + PD T + + +WE G + +G S VN + + DG + +G DD+
Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSW-VNSVGFSQDGKMLASGSDDQ 928
Query: 552 IVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFWKFPS 704
V++W + G GH+ + + SP+ ++ + S D + W S
Sbjct: 929 TVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISS 979
Score = 38.1 bits (87), Expect = 0.032
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 486 GSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTV 665
GSV + + DG +F TG IV+ W+ G GH+ + + S D +++ +
Sbjct: 865 GSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASG 924
Query: 666 SEDGAIYFWKFPS 704
S+D + W S
Sbjct: 925 SDDQTVRLWDISS 937
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 73.9 bits (180), Expect = 5e-13
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 15/242 (6%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQP--------NSIPHSHGVRK 167
+ H V +VA + D +++ SG + +++W +Q S+ S ++
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQR 1065
Query: 168 KASN-----VKSVVYVAHMETAMKE-HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKY 329
AS +K V+ T E H ++V + + D + S S DGT IW
Sbjct: 1066 VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASG 1125
Query: 330 TRKQIMFANTLF-RCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMD 506
T Q + + + V + PD ++ + D I W+ G+ + LEG G V +
Sbjct: 1126 TCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEG-HGGWVQSVA 1184
Query: 507 ITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIY 686
+ DG +G DK +K+W G T GH + + SPD Q + + S D I
Sbjct: 1185 FSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIK 1244
Query: 687 FW 692
W
Sbjct: 1245 IW 1246
Score = 73.6 bits (179), Expect = 7e-13
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 15/242 (6%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQP--------NSIPHSHGVRK 167
+ H V +VA + D +++ SG + +++W +Q S+ S ++
Sbjct: 880 EGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQR 939
Query: 168 KASNVKS---VVYVAHMETA---MKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKY 329
AS ++ A T ++ H ++V + + D + S S D T IW
Sbjct: 940 VASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASG 999
Query: 330 TRKQIMFANT-LFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMD 506
T Q + + V + PD ++ + D+ I W+ G+ + LEG G V +
Sbjct: 1000 TCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEG-HGGWVQSVV 1058
Query: 507 ITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIY 686
+ DG +G DD +K+W G T GH + + SPD Q + + S DG I
Sbjct: 1059 FSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIK 1118
Query: 687 FW 692
W
Sbjct: 1119 IW 1120
Score = 58.2 bits (139), Expect = 3e-08
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 1/194 (0%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKASNVKSV 191
+ H V +VA + D +++ SG +G +++W +Q
Sbjct: 1090 EGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQ-------------------- 1129
Query: 192 VYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANTLF-R 368
++ H V + + D + S S DGT IW T Q + + + +
Sbjct: 1130 --------TLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181
Query: 369 CVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDD 548
V + PD ++ + +D+ I W+ G+ + LEG G V + + DG +G D
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEG-HGGWVQSVAFSPDGQRVASGSSD 1240
Query: 549 KIVKVWKYNEGFVT 590
+K+W G T
Sbjct: 1241 NTIKIWDTASGTCT 1254
Score = 56.6 bits (135), Expect = 9e-08
Identities = 31/107 (28%), Positives = 50/107 (46%)
Frame = +3
Query: 372 VCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDK 551
V + D ++ + D+ I W+ G+ + LEG GSV + + D + +G DDK
Sbjct: 847 VAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEG-HGGSVWSVAFSPDRERVASGSDDK 905
Query: 552 IVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
+K+W G T GH + + SPD Q + + S+D I W
Sbjct: 906 TIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIW 952
Score = 48.1 bits (113), Expect = 3e-05
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 468 LEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDR 647
LEG S SV + ++DG +G DDK +K+W G T GH + + SPDR
Sbjct: 837 LEGHGS-SVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDR 895
Query: 648 QLITTVSEDGAIYFW 692
+ + + S+D I W
Sbjct: 896 ERVASGSDDKTIKIW 910
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 72.0 bits (175), Expect = 2e-12
Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 18/245 (7%)
Frame = +3
Query: 12 DAHKKGVTAVAATSDCKKIVSGGGEGQVRVWRI---EECKVSQ------------PNSIP 146
+ H V AVA + D + SG + VR+W + EE V + P+
Sbjct: 498 EGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSM 557
Query: 147 HSHGVRKKASNVKSVVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIK 326
+ G R + + +V +K H + V + + D + S S DGT +W +
Sbjct: 558 VASGSRDGTARLWNVA-TGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVAT 616
Query: 327 YTRKQIMFA---NTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVN 497
+ ++ A N + + + PD ++ G+D + W+V G + EG + V
Sbjct: 617 GKERDVLQAPAENVV--SLAFSPDGSMLV-HGSDSTVHLWDVASGEALHTFEG-HTDWVR 672
Query: 498 GMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDG 677
+ + DG + +G DD+ +++W GH+ P+ + P+ + + SEDG
Sbjct: 673 AVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDG 732
Query: 678 AIYFW 692
I W
Sbjct: 733 TIRIW 737
Score = 49.3 bits (116), Expect = 1e-05
Identities = 28/107 (26%), Positives = 46/107 (42%)
Frame = +3
Query: 372 VCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDK 551
V + P + D+ I W+V G + LEG + V + + DG + +G DD
Sbjct: 465 VAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEG-HTDWVRAVAFSPDGALLASGSDDA 523
Query: 552 IVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
V++W V GH+ + + SPD ++ + S DG W
Sbjct: 524 TVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDGTARLW 570
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 (Transcription
initiation factor TFIID 100 kDa subunit) (TAF(II)100)
(TAFII-100) (TAFII100)
Length = 800
Score = 71.2 bits (173), Expect = 3e-12
Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 9/232 (3%)
Frame = +3
Query: 24 KGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKASNVKSVVYVA 203
+G+TAV T D I G + VRVW + K+ + K++ +V +
Sbjct: 471 QGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDE 530
Query: 204 HMETAMK---EHANAVSCIRMNKDDTQCVSSSADGTCIIW------CLIKYTRKQIMFAN 356
+ +K H+ V + D +SSS DGT +W CL+ Y +
Sbjct: 531 KTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD 590
Query: 357 TLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVT 536
T F P ++ G DR W +R G + VN + + T
Sbjct: 591 TQFS-----PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLA-DVNCTRFHPNSNYVAT 644
Query: 537 GGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
G D+ V++W G + GH PI L SP+ + + T + DG + W
Sbjct: 645 GSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 696
Score = 47.8 bits (112), Expect = 4e-05
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANT-LFRCVCWRPDECQII 404
H V+C R + + + SAD T +W ++ +I + + + P+ +
Sbjct: 626 HLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLA 685
Query: 405 TSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGF 584
T TD ++ W++ G ++ EL+G + +V + + DG+I +G D V++W + F
Sbjct: 686 TGATDGRVLLWDIGHGLMVGELKG-HTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAF 744
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 (Transcription
initiation factor TFIID 100 kDa subunit) (TAF(II)100)
(TAFII-100) (TAFII100)
Length = 801
Score = 70.9 bits (172), Expect = 4e-12
Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 9/232 (3%)
Frame = +3
Query: 24 KGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVRKKASNVKSVVYVA 203
+G+TAV T D I G + VRVW + K+ + K++ +V +
Sbjct: 472 QGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDE 531
Query: 204 HMETAMK---EHANAVSCIRMNKDDTQCVSSSADGTCIIW------CLIKYTRKQIMFAN 356
+ +K H+ V + D +SSS DGT +W CL+ Y +
Sbjct: 532 KTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD 591
Query: 357 TLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVT 536
T F P ++ G DR W +R G + VN + + T
Sbjct: 592 TQFS-----PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLA-DVNCTRYHPNSNYVAT 645
Query: 537 GGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
G D+ V++W G + GH PI L SP+ + + T + DG + W
Sbjct: 646 GSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 697
Score = 47.4 bits (111), Expect = 5e-05
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANT-LFRCVCWRPDECQII 404
H V+C R + + + SAD T +W ++ +I + + + P+ +
Sbjct: 627 HLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLA 686
Query: 405 TSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGF 584
T TD ++ W++ G ++ EL+G + +V + + DG+I +G D V++W + F
Sbjct: 687 TGATDGRVLLWDIGHGLMVGELKG-HTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAF 745
>sp|P74442|Y143_SYNY3 Hypothetical WD-repeat protein slr0143
Length = 1191
Score = 69.7 bits (169), Expect = 1e-11
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIWCLI-KYTRKQIMFANTLFRCVCWRPDECQII 404
H + V+ + ++ S+S DGT +W ++ R+ +++R V + P+
Sbjct: 559 HRDGVTSVAISSHKNLIASASRDGTVHLWTPQGEFLREFTGHTGSIYR-VDFSPNGKIFA 617
Query: 405 TSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGF 584
T+G D+ + W++ DG+L++ L+G + SV + + DG+I + D+ V++W + G
Sbjct: 618 TAGQDQTVKIWDL-DGNLLQTLKGHQD-SVYSVSFSPDGEILASTSRDRTVRLWHWRSGK 675
Query: 585 VTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
V GH+ + + SPD Q + +V DG I W
Sbjct: 676 TLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLW 711
Score = 55.8 bits (133), Expect = 1e-07
Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 16/250 (6%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWR---------------IEECKVSQPNSIPHS 152
H+ GVT+VA +S I S +G V +W I S I +
Sbjct: 559 HRDGVTSVAISSHKNLIASASRDGTVHLWTPQGEFLREFTGHTGSIYRVDFSPNGKIFAT 618
Query: 153 HGVRKKASNVKSVVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYT 332
G + VK ++ +K H ++V + + D S+S D T +W
Sbjct: 619 AG---QDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGK 675
Query: 333 RKQIMFANTL-FRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDI 509
++ +T + PD +++ D +I W++ DG+LIR+ G + G++
Sbjct: 676 TLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDL-DGNLIRQF-GLPEVAFFGVNW 733
Query: 510 TSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYF 689
+G++ DD V++W +G + GH +TR+ +PD + + + S +G++
Sbjct: 734 HPNGNLLAVAADDGTVRLWT-PQGEIKATLSGHDEFVTRVVFTPDGKQLFSSSSNGSVIH 792
Query: 690 WKFPSV*LKE 719
W LK+
Sbjct: 793 WSTSGKMLKK 802
Score = 51.2 bits (121), Expect = 4e-06
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +3
Query: 366 RCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGD 545
R V P Q+ + W +DG+LIR + + +N + + +G ++ G
Sbjct: 1001 RSVSLHPTLPQLAAGDEQGNLTLWN-FDGTLIRSIV-AHGDRLNQLQYSPNGKYLLSAGR 1058
Query: 546 DKIVKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
+ K+W EG + H +PI ++ ISPD Q I T + DG + W
Sbjct: 1059 EGTAKIWSV-EGQLLHTLKSDPLPIDQIAISPDSQWIATAASDGMVRLW 1106
>sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog
Length = 854
Score = 69.3 bits (168), Expect = 1e-11
Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 10/236 (4%)
Frame = +3
Query: 15 AHKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEE--CKVSQPNSIPHSHGVRKKASNVKS 188
+H ++ + +SD ++I++G +G+++VW + C V+
Sbjct: 337 SHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVT-------------------- 376
Query: 189 VVYVAHMETAMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFA--NTL 362
+H +AVS + +K SSS DG+ W LI+Y + A
Sbjct: 377 ----------FTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQ 426
Query: 363 FRCVCWRPDECQIITSGTDR--KIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVT 536
F C+ P +I+ +G+ +I W V G L+ L G G V+ + S G + +
Sbjct: 427 FSCIAVDPSG-EIVCAGSQDSFEIFMWSVQTGQLLETLAG-HEGPVSSLSFNSSGSLLAS 484
Query: 537 GGDDKIVKVWKYNEGFVTHVGLGHSMPI----TRLRISPDRQLITTVSEDGAIYFW 692
G DK V++W + G+ +PI L PD + + S DG + FW
Sbjct: 485 GSWDKTVRIW----DIFSRSGIVEPLPIPSDVLSLAFHPDGKEVCVASLDGQLTFW 536
Score = 43.9 bits (102), Expect = 6e-04
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 435 WEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGFVTHVGLGHSM 614
WE S + + + S +++ + +SDG +TG DD +KVW N GF H+
Sbjct: 324 WEWQSESYVLKQQ-SHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTS 382
Query: 615 PITRLRISPDRQLITTVSEDGAIYFW 692
++ L S ++ + S DG++ W
Sbjct: 383 AVSGLCFSKRGNVLFSSSLDGSVRAW 408
Score = 41.2 bits (95), Expect = 0.004
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Frame = +3
Query: 216 AMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKY------------------TRKQ 341
A+ H N V +KD + S DG +W KY TR
Sbjct: 185 ALTGHKNTVVSGFFSKDQQTIYTVSKDGALFVW---KYSPLFQAGEVIDEEAEENKTRTH 241
Query: 342 IMFA--------NTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVN 497
I N+ RC + P ++ + G +E+ +++ +L ++S +++
Sbjct: 242 IWLIKERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFGIYELPSFTMLYQLSITQS-NID 300
Query: 498 GMDITSDGDIFVTGGDDKI--VKVWKYNEGFVTHVGLGHSMPITRLRISPDRQLITTVSE 671
+ + S GD ++ G K+ + VW++ H ++ L+ S D Q I T ++
Sbjct: 301 TLTVNSTGD-WIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIITGAD 359
Query: 672 DGAIYFWKFPS 704
DG I W S
Sbjct: 360 DGKIKVWDMNS 370
Score = 37.0 bits (84), Expect = 0.071
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 510 TSDGDIFVTGGDDKIVKVWKYN--EGFVTHVGLGHSMPITRLRISPDRQLITTVSEDGAI 683
++D F++ D ++ + EGF GH + S D+Q I TVS+DGA+
Sbjct: 155 SADSRFFISTSKDLTARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTVSKDGAL 214
Query: 684 YFWKF 698
+ WK+
Sbjct: 215 FVWKY 219
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = +3
Query: 354 NTLFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGM 503
N F +C+ D ++++GT + + +++ G LI++ + S++ S+ G+
Sbjct: 571 NKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKFQLSKNESLQGV 620
Score = 30.4 bits (67), Expect = 6.7
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Frame = +3
Query: 267 DTQCVSSSADGTCIIW--CLIKYTRKQIMFANTLFRCVCWRPDECQIITSGTDRKIGYWE 440
D + SS G ++W Y KQ + L + + D +IIT D KI W+
Sbjct: 309 DWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDAL-STLQYSSDGQRIITGADDGKIKVWD 367
Query: 441 VYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKY--NEGFVTHVGLGHSM 614
+ G I + +V+G+ + G++ + D V+ W F T +
Sbjct: 368 MNSGFCIVTFT-QHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSR-V 425
Query: 615 PITRLRISPDRQLITTVSEDG-AIYFW 692
+ + + P +++ S+D I+ W
Sbjct: 426 QFSCIAVDPSGEIVCAGSQDSFEIFMW 452
>sp|O43017|SWD3_SCHPO Set1 complex component swd3 (Set1C component swd3) (COMPASS
component swd3) (Complex proteins associated with set1
protein swd3)
Length = 380
Score = 68.9 bits (167), Expect = 2e-11
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Frame = +3
Query: 228 HANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYTRKQIMFANTL-FRCVCWRPDECQII 404
H +V+C+ ++ + +SS+DGT IW + + + +F + V W +
Sbjct: 53 HEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLA 112
Query: 405 TSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDITSDGDIFVTGGDDKIVKVWKYNEGF 584
++ D+ I W+ +R L+G + V+ +D G + V+G D+ V++W +G
Sbjct: 113 SASDDKTIRIWDFEKRCSVRCLKG-HTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGT 171
Query: 585 VTHVGLGHSMPITRLRISPDRQLITTVSEDGAIYFW 692
+ HS PI + IS D L T S DG W
Sbjct: 172 CLRMLPAHSEPIISVSISADGTLCATASYDGMARIW 207
Score = 46.2 bits (108), Expect = 1e-04
Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 21/220 (9%)
Frame = +3
Query: 18 HKKGVTAVAATSDCKKIVSGGGEGQVRVWRIEECKVSQPNSIPHSHGVR--KKASNVKSV 191
H+K VT V+ + + + I + +G +++W ++ + H G+ K A+ K +
Sbjct: 53 HEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRL-ECTLFGHYRGISQVKWATGSKYL 111
Query: 192 VYVAHMET-------------AMKEHANAVSCIRMNKDDTQCVSSSADGTCIIWCLIKYT 332
+ +T +K H N VS I N T VS S D T IW L T
Sbjct: 112 ASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGT 171
Query: 333 RKQIMFANT-LFRCVCWRPDECQIITSGTDRKIGYWEVYDGSLIRELEGSRSGSVNGMDI 509
+++ A++ V D T+ D W+V G ++ L + ++ +
Sbjct: 172 CLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVEPINVPLSNLQF 231
Query: 510 TSDGDIFVTGGDDKIVKVWKYNEG-----FVTHVGLGHSM 614
T + + + +++W Y F +HV +SM
Sbjct: 232 TENRKYLLVSNLNSQIRLWDYRRNRVVRIFDSHVNTRYSM 271
Score = 33.5 bits (75), Expect = 0.79
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 549 KIVKVWKYNEGFVTHVGL-GHSMPITRLRISPDRQLITTVSEDGAIYFW 692
K ++ ++ + GF + L GH +T + +SP+++ I T S DG I W
Sbjct: 33 KRIRNYESHSGFSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIW 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,631,911
Number of Sequences: 369166
Number of extensions: 2236438
Number of successful extensions: 8433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7258
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)