Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B21
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43212|PGLR2_CRYJA Polygalacturonase precursor (PG) (Pec... 32 2.8
sp|P35352|CAR3_DICDI Cyclic AMP receptor 3 (cAMP receptor 3) 31 4.8
sp|P82144|PLIGA_AGKBL Phospholipase A2 inhibitor gamma subu... 30 8.1
sp|P51528|PA1_VESMC Phospholipase A1 (Allergen Ves m 1) (Ve... 30 8.1
>sp|P43212|PGLR2_CRYJA Polygalacturonase precursor (PG) (Pectinase) (Major pollen allergen
Cry j 2) (Cry j II)
Length = 514
Score = 31.6 bits (70), Expect = 2.8
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -3
Query: 663 ISVRSLSGVLLICCNLT*HNSGLFSGNISINGCCSKCPSIRSRNSKSQKH 514
IS++ SG + C N + +G FSG++ I C + PS + + SKS KH
Sbjct: 398 ISLKLTSGKIASCLND--NANGYFSGHV-IPACKNLSPSAKRKESKSHKH 444
>sp|P35352|CAR3_DICDI Cyclic AMP receptor 3 (cAMP receptor 3)
Length = 490
Score = 30.8 bits (68), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 799 HKNHNQRANSIHNRRDNTNNN 737
H NHN N+ HN +N NNN
Sbjct: 324 HHNHNNNHNNNHNNHNNNNNN 344
>sp|P82144|PLIGA_AGKBL Phospholipase A2 inhibitor gamma subunit A precursor (PLI-gamma A)
(Phospholipase A2 inhibitor gamma 25 kDa subunit)
Length = 200
Score = 30.0 bits (66), Expect = 8.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 627 CCNLT*HNSGLFSGNISIN--GCCSKCPSIRSRNSKSQKHFHAINNSVQC 484
C N+ H + G+IS N GC S CP + NS +++ + + V+C
Sbjct: 143 CINIVGHRHENYPGDISYNLKGCVSSCPLLSLSNSTHEENRNYL-EKVEC 191
>sp|P51528|PA1_VESMC Phospholipase A1 (Allergen Ves m 1) (Ves m I)
Length = 300
Score = 30.0 bits (66), Expect = 8.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = -3
Query: 516 HFHAINNSVQCTKYRCC--NCPRSKSK---*KCAN*QCDCKEKN*QYY--RAGFY 373
H A+ +C K+ CC PRSKS +C +C C N + Y R FY
Sbjct: 229 HTRAVIYMAECIKHECCLIGIPRSKSSQPISRCTKQECVCVGLNAKKYPSRGSFY 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,633,365
Number of Sequences: 369166
Number of extensions: 1690904
Number of successful extensions: 4183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4063
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)