Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B19
(592 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O99255|COX1_PLACH Cytochrome c oxidase subunit 1 (Cytoch... 35 0.11
sp|O99252|COX1_PLABE Cytochrome c oxidase subunit 1 (Cytoch... 35 0.18
sp|Q02766|COX1_PLAFA Cytochrome c oxidase subunit 1 (Cytoch... 33 0.41
sp|Q36675|COX3_PLAVI Cytochrome c oxidase subunit 3 (Cytoch... 32 0.91
sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 31 2.0
sp|P15544|COX1_STRPU Cytochrome c oxidase subunit 1 (Cytoch... 31 2.6
sp|Q9R244|TRPC2_MOUSE Short transient receptor potential ch... 31 2.6
sp|Q9U1M2|Y33B_DROME Hypothetical protein CG32795 in chromo... 31 2.6
sp|Q9R283|TRPC2_RAT Short transient receptor potential chan... 31 2.6
sp|P47360|PGSA_MYCGE CDP-diacylglycerol--glycerol-3-phospha... 30 4.5
>sp|O99255|COX1_PLACH Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 476
Score = 35.4 bits (80), Expect = 0.11
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +2
Query: 95 WVLIANKNIKLHGYSSVWSFLIYGI-GLLLMERIRIFLHTRKINVFYRGSIYL---IWTY 262
+ LI N N K G +W ++GI G LL +R L++ + + + ++ L I+T
Sbjct: 6 YALITNCNHKTLGLYYLWFSFLFGIYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFT- 64
Query: 263 AWELLWGVVLLYFDCHSWDYSGYSNYHL 346
+ G+++++F+ + G+ NY+L
Sbjct: 65 ----VHGIIMIFFNIMPGLFGGFGNYYL 88
>sp|O99252|COX1_PLABE Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 476
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 95 WVLIANKNIKLHGYSSVW-SFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYL---IWTY 262
+ LI N N K G +W SFL G LL +R L++ + + + ++ L I+T
Sbjct: 6 YALITNCNHKTLGLYYLWFSFLFGTYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFT- 64
Query: 263 AWELLWGVVLLYFDCHSWDYSGYSNYHL 346
+ G+++++F+ + G+ NY+L
Sbjct: 65 ----IHGIIMIFFNIMPGLFGGFGNYYL 88
>sp|Q02766|COX1_PLAFA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 476
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +2
Query: 101 LIANKNIKLHGYSSVW-SFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYL---IWTYAW 268
LI N N K G +W SFL G LL +R L++ + + + ++ L I+T
Sbjct: 8 LITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFT--- 64
Query: 269 ELLWGVVLLYFDCHSWDYSGYSNYHL 346
+ G+++++F+ + G+ NY L
Sbjct: 65 --IHGIIMIFFNIMPGLFGGFGNYFL 88
>sp|Q36675|COX3_PLAVI Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 263
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/70 (22%), Positives = 38/70 (54%)
Frame = +2
Query: 53 GLHGFAIEVVFCAVWVLIANKNIKLHGYSSVWSFLIYGIGLLLMERIRIFLHTRKINVFY 232
GLH F+ +V + ++ + ++++ +S WS+ +YGI +++ HT +I + Y
Sbjct: 193 GLH-FSHVIVGLLLLLIYFIRIVEMYDTNSEWSYSLYGISYIVLP------HTDQITILY 245
Query: 233 RGSIYLIWTY 262
+ ++W +
Sbjct: 246 WHFVEIVWLF 255
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1
Length = 461
Score = 31.2 bits (69), Expect = 2.0
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -2
Query: 585 HSKAERDSSENMKTKLKFQFVNKRSIN*SSLQQQHGGRGGGDSWVEQVHRRWDTNRIR*T 406
HS + RD ++++ K K + N+ +LQ G GG +W +++ R WD ++
Sbjct: 43 HSSSHRDRDKHVQRKKKKRLSNR------NLQ----GSNGGYAWEDEIKRSWDLVKVDDE 92
Query: 405 S------ATIDEMNHKGAYSKLIKPHK 343
A+I E K K I P++
Sbjct: 93 GDMASLVASIVEARKKRTAKKNITPYQ 119
>sp|P15544|COX1_STRPU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 517
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = +2
Query: 122 KLHGYSSVWSF-LIYGIGLLLMERIR----IFLHTRKINVFYRGSIYLIWTYAWELLWGV 286
KL G + WS L++ +G++ + + I L I+ + Y++ + + L G
Sbjct: 326 KLQGSNLQWSLPLLWTLGIVFLFTLGGLTGIVLANSSIDFVLHDTYYVVAHFHYVLSMGA 385
Query: 287 VLLYFDCHS-WD--YSGYSNYHLWGLINF 364
V F + W +SGYS + LWG ++F
Sbjct: 386 VFAIFAGFTHWFPLFSGYSLHPLWGKVHF 414
>sp|Q9R244|TRPC2_MOUSE Short transient receptor potential channel 2 (TrpC2) (mTrp2)
Length = 1172
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +2
Query: 125 LHGYSSVWSFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYLIWTYAWELLWGVVLLYFD 304
LH S +W FLI+ +G L+ ++ ++G +W + ++W L+F+
Sbjct: 667 LHSASYLW-FLIFLLGESLVMETQLST--------FKGRSQSVWETSLHMIWVTGFLWFE 717
Query: 305 CHSWDYSGYSNYHL--WGLINFEYAPLWFISSIVADVYLIRFVSHL 436
C G +Y L W F+ ++ +YL F L
Sbjct: 718 CKEVWIEGLRSYLLDWWN----------FLDVVILSLYLASFALRL 753
>sp|Q9U1M2|Y33B_DROME Hypothetical protein CG32795 in chromosome 1
Length = 387
Score = 30.8 bits (68), Expect = 2.6
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Frame = +2
Query: 95 WVLIANKNIKLHGYSSVWSFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYLIWTYAWEL 274
W + + + + Y S+ +L +G L+ R++ +++ G +W L
Sbjct: 209 WQIFRMQFMYFNVYISIVQYLQFGYQKGLLYRLKALGERHNMDITIEGFHSWMWRGLSFL 268
Query: 275 LWGVVLLYFDCHSWDYSGYSNYHLWGLINFEYAP---LWFISSIVADVYLIRFVSHLRWT 445
L + + Y GY Y+ W L Y+P W + S+++ ++L+ FV ++ T
Sbjct: 269 LPFLFIGY---------GYQAYNAWTLYKLAYSPPDAPWHV-SVMSGLFLLLFVGNMATT 318
>sp|Q9R283|TRPC2_RAT Short transient receptor potential channel 2 (TrpC2) (rTRP2)
Length = 885
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +2
Query: 125 LHGYSSVWSFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYLIWTYAWELLWGVVLLYFD 304
LH S +W FLI+ +G L+ ++ ++G +W + ++W L+F+
Sbjct: 383 LHSASYLW-FLIFLLGESLVMETQLST--------FKGRSQSVWETSLHMIWVTGFLWFE 433
Query: 305 CHSWDYSGYSNYHL--WGLINFEYAPLWFISSIVADVYLIRFVSHL 436
C G +Y L W F+ ++ +YL F L
Sbjct: 434 CKEVWIEGLRSYLLDWWN----------FLDVVILSLYLASFALRL 469
>sp|P47360|PGSA_MYCGE CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
(Phosphatidylglycerophosphate synthase) (PGP synthase)
Length = 236
Score = 30.0 bits (66), Expect = 4.5
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Frame = +2
Query: 98 VLIANKNIKLHGYSSVWSFLIYGIGLLLMERIRIFLHTRKINVFYRGSIYLIWTYAWELL 277
VLIA + ++GY +++ + L+++ +RI+ + +K+ + W W+ +
Sbjct: 120 VLIA---LAINGYFHFSLLIVFIVRDLVLDGMRIYAYEKKVVIAAN------WLGKWKTI 170
Query: 278 WGVVLLYFDCHSWDY------SGYSNYHLWGLINFEY--APLWFISSIVADVYLIRFVSH 433
+V + F C W + S S W L Y A ++ I S + VY I+
Sbjct: 171 MQMVGIVFSCFVWSFKQSEIASLNSGLFFWLLTQLPYYLAAVFSIWSFI--VYNIQIYQQ 228
Query: 434 LR 439
L+
Sbjct: 229 LK 230
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,763,026
Number of Sequences: 369166
Number of extensions: 1493112
Number of successful extensions: 3603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3600
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)