Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B11
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 218 7e-57
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 218 7e-57
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 216 2e-56
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 216 2e-56
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 216 2e-56
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 214 1e-55
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 213 2e-55
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 212 3e-55
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 211 5e-55
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 211 9e-55
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 218 bits (554), Expect = 7e-57
Identities = 101/129 (78%), Positives = 115/129 (89%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM
Sbjct: 370 CKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 218 bits (554), Expect = 7e-57
Identities = 99/129 (76%), Positives = 119/129 (92%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIA 367
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVRDM
Sbjct: 368 CKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDM 427
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 428 RQTVAVGVI 436
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 216 bits (551), Expect = 2e-56
Identities = 100/129 (77%), Positives = 115/129 (89%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM
Sbjct: 370 CKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 216 bits (550), Expect = 2e-56
Identities = 98/129 (75%), Positives = 119/129 (92%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIA 367
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM
Sbjct: 368 CKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDM 427
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 428 RQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 216 bits (550), Expect = 2e-56
Identities = 98/129 (75%), Positives = 119/129 (92%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIA 367
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM
Sbjct: 368 CKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDM 427
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 428 RQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 214 bits (544), Expect = 1e-55
Identities = 97/129 (75%), Positives = 117/129 (90%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTAHIA
Sbjct: 310 FNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM
Sbjct: 370 CKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 213 bits (542), Expect = 2e-55
Identities = 100/129 (77%), Positives = 113/129 (87%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIA
Sbjct: 310 FNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM
Sbjct: 370 CKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 212 bits (540), Expect = 3e-55
Identities = 99/129 (76%), Positives = 118/129 (91%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRGNV SDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIA 367
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL++KIDRR+GK LE PK KSGDA +V+LVPSKPMCVE+++EYPPLGRFAVRDM
Sbjct: 368 CKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDM 427
Query: 361 KQTVAVGVI 387
+QTVAVG+I
Sbjct: 428 RQTVAVGII 436
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 211 bits (538), Expect = 5e-55
Identities = 99/129 (76%), Positives = 113/129 (87%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIA
Sbjct: 310 FNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM
Sbjct: 370 CKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 211 bits (536), Expect = 9e-55
Identities = 97/129 (75%), Positives = 116/129 (89%)
Frame = +1
Query: 1 FNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIA 180
FN+KNVSVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 181 CKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDM 360
CKF EL +K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 361 KQTVAVGVI 387
+QTVAVGVI
Sbjct: 430 RQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,317,497
Number of Sequences: 369166
Number of extensions: 1007742
Number of successful extensions: 2796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2765
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)