Planarian EST Database


Dr_sW_011_B10

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_011_B10
         (659 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60842|IF4A1_HUMAN  Eukaryotic initiation factor 4A-I (eI...   291   1e-78
sp|Q5R5F5|IF4A1_PONPY  Eukaryotic initiation factor 4A-I (eI...   291   1e-78
sp|P29562|IF4A1_RABIT  Eukaryotic initiation factor 4A-I (eI...   291   1e-78
sp|P47943|IF4A_SCHPO  Eukaryotic initiation factor 4A (eIF4A...   290   2e-78
sp|Q4R8K5|IF4A1_MACFA  Eukaryotic initiation factor 4A-I (eI...   290   3e-78
sp|P10630|IF4A2_MOUSE  Eukaryotic initiation factor 4A-II (e...   289   4e-78
sp|Q4R4Y9|IF4A2_MACFA  Eukaryotic initiation factor 4A-II (e...   289   4e-78
sp|Q02748|IF4A_DROME  Eukaryotic initiation factor 4A (eIF4A...   281   1e-75
sp|P27639|IF4A_CAEEL  Eukaryotic initiation factor 4A (eIF4A...   276   3e-74
sp|P10081|IF4A_YEAST  Eukaryotic initiation factor 4A (eIF4A...   270   2e-72
>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
 sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
          Length = 406

 Score =  291 bits (745), Expect = 1e-78
 Identities = 145/199 (72%), Positives = 169/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV  E++K +TL DLY
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 267

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAIN VT++D RTL+D+
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T IEEMP+N+ADLI
Sbjct: 388 ETFYNTSIEEMPLNVADLI 406
>sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
          Length = 406

 Score =  291 bits (745), Expect = 1e-78
 Identities = 145/199 (72%), Positives = 169/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV  E++K +TL DLY
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 267

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAIN VT++D RTL+D+
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T IEEMP+N+ADLI
Sbjct: 388 ETFYNTSIEEMPLNVADLI 406
>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
          Length = 398

 Score =  291 bits (745), Expect = 1e-78
 Identities = 145/199 (72%), Positives = 169/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV  E++K +TL DLY
Sbjct: 200 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 259

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 260 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 319

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAIN VT++D RTL+D+
Sbjct: 320 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 379

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T IEEMP+N+ADLI
Sbjct: 380 ETFYNTSIEEMPLNVADLI 398
>sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 392

 Score =  290 bits (742), Expect = 2e-78
 Identities = 143/199 (71%), Positives = 167/199 (83%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT KFMR P++ILVKK+ELTLEGI+QFYV V +E++K +TL DLY
Sbjct: 194 QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLY 253

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ET+T+TQAVIFCNTRRKVD+LTE L  + F VSSMHGDM Q  RD +M EFR+GSSRILI
Sbjct: 254 ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILI 313

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            V+INFVT DD+R ++++
Sbjct: 314 TTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E +Y+THIEEMPMNIADLI
Sbjct: 374 EQFYNTHIEEMPMNIADLI 392
>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
          Length = 406

 Score =  290 bits (741), Expect = 3e-78
 Identities = 144/199 (72%), Positives = 168/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV  E++K +TL DLY
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 267

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F  S+MHGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAIN VT++D RTL+D+
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T IEEMP+N+ADLI
Sbjct: 388 ETFYNTSIEEMPLNVADLI 406
>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
 sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
 sp|Q5R4X1|IF4A2_PONPY Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
          Length = 407

 Score =  289 bits (740), Expect = 4e-78
 Identities = 143/199 (71%), Positives = 169/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV  E++K +TL DLY
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLY 268

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F VS++HGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAINFVT++D R L+D+
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T +EEMPMN+ADLI
Sbjct: 389 ETFYNTTVEEMPMNVADLI 407
>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
          Length = 408

 Score =  289 bits (740), Expect = 4e-78
 Identities = 143/199 (71%), Positives = 169/199 (84%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV  E++K +TL DLY
Sbjct: 210 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLY 269

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           ETLTITQAVIF NTRRKVD+LTE + A+ F VS++HGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 270 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 329

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLP+NRENYIH            VAINFVT++D R L+D+
Sbjct: 330 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 389

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E++Y+T +EEMPMN+ADLI
Sbjct: 390 ETFYNTTVEEMPMNVADLI 408
>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 403

 Score =  281 bits (718), Expect = 1e-75
 Identities = 142/199 (71%), Positives = 163/199 (81%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q++LLSATMPPDVLEV+R FMR PV ILVKKEELTLEGI+QFYVNV +E++K  TL DLY
Sbjct: 205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLY 264

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           +TL+ITQ+VIFCNTRRKVD LT+ +    F VS+MHGDM+Q  R+ IMK+FRSGSSR+LI
Sbjct: 265 DTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLI 324

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTDLLARGIDVQQVSLVINYDLPSNRENYIH            VAINF+T DD R L+D+
Sbjct: 325 TTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDI 384

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E +Y T IEEMP NIADLI
Sbjct: 385 EQFYHTTIEEMPANIADLI 403
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 402

 Score =  276 bits (707), Expect = 3e-74
 Identities = 136/199 (68%), Positives = 164/199 (82%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP +VL+VT +FMR+P++ILVKK+ELTLEGIRQFY+NV ++++KF+ L DLY
Sbjct: 204 QVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLY 263

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
             + +TQAVIFCNTRRKVD LTE +   QF VS +HGDM Q  RD IM+EFRSGSSR+LI
Sbjct: 264 NVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLI 323

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           TTD+LARGIDVQQVSLVINYDLPSNRENYIH            VAINFVT++D R L+++
Sbjct: 324 TTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI 383

Query: 541 ESYYSTHIEEMPMNIADLI 597
           ESYY+T IEEMP +IADLI
Sbjct: 384 ESYYTTQIEEMPESIADLI 402
>sp|P10081|IF4A_YEAST Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) (Stimulator factor
           I 37 kDa component) (p37)
          Length = 395

 Score =  270 bits (690), Expect = 2e-72
 Identities = 134/199 (67%), Positives = 165/199 (82%)
 Frame = +1

Query: 1   QIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLY 180
           Q+VLLSATMP DVLEVT KFMR+PV+ILVKK+ELTLEGI+QFYVNV EE+YK+E LTDLY
Sbjct: 196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 255

Query: 181 ETLTITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILI 360
           +++++TQAVIFCNTRRKV+ LT  L+  +F VS+++ D+ Q  RD IMKEFRSGSSRILI
Sbjct: 256 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 315

Query: 361 TTDLLARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDL 540
           +TDLLARGIDVQQVSLVINYDLP+N+ENYIH            VAINFVT +D+  +++L
Sbjct: 316 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 375

Query: 541 ESYYSTHIEEMPMNIADLI 597
           E +YST IEE+P +IA L+
Sbjct: 376 EKFYSTQIEELPSDIATLL 394
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,960,465
Number of Sequences: 369166
Number of extensions: 1145131
Number of successful extensions: 3136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)