Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B08
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26639|SYTC_HUMAN Threonyl-tRNA synthetase, cytoplasmic ... 356 5e-98
sp|Q9D0R2|SYTC_MOUSE Threonyl-tRNA synthetase, cytoplasmic ... 351 1e-96
sp|Q5XHY5|SYTC_RAT Threonyl-tRNA synthetase, cytoplasmic (T... 351 1e-96
sp|O04630|SYTM_ARATH Threonyl-tRNA synthetase, mitochondria... 330 4e-90
sp|P52709|SYTC_CAEEL Threonyl-tRNA synthetase, cytoplasmic ... 323 3e-88
sp|P04801|SYTC_YEAST Threonyl-tRNA synthetase, cytoplasmic ... 321 1e-87
sp|P87144|SYTC_SCHPO Threonyl-tRNA synthetase, cytoplasmic ... 311 1e-84
sp|P07236|SYTM_YEAST Threonyl-tRNA synthetase, mitochondria... 289 6e-78
sp|Q67LA3|SYT_SYMTH Threonyl-tRNA synthetase (Threonine--tR... 286 4e-77
sp|P18256|SYT2_BACSU Threonyl-tRNA synthetase 2 (Threonine-... 276 5e-74
>sp|P26639|SYTC_HUMAN Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 723
Score = 356 bits (913), Expect = 5e-98
Identities = 167/263 (63%), Positives = 206/263 (78%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
F EV TP IF + LW TSGHW HY E++F ++ +E++ LKPMNCP HCL+F H+ R
Sbjct: 369 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVE-KELFALKPMNCPGHCLMFDHRPRSW 427
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
+LPLRLADFG LHR E S +L GLTR+R+F QDDAHIFC +QIE EI+G LDFL VY
Sbjct: 428 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVY 487
Query: 363 GILNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDIS 542
+ F + L LSTRP +FLGDIE WD AE+QL+ SL++FG+ W LNSGDGAFYGPKIDI
Sbjct: 488 SVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQ 547
Query: 543 IKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILIE 722
IKDA+ R++QCATIQLDFQLPI+F+L Y ++ +RPVI+HRAILGSVER++AIL E
Sbjct: 548 IKDAIGRYHQCATIQLDFQLPIRFNLTY-VSHDGDDKKRPVIVHRAILGSVERMIAILTE 606
Query: 723 SNGGKWPFWLNPRQILVVPVAET 791
+ GGKWPFWL+PRQ++VVPV T
Sbjct: 607 NYGGKWPFWLSPRQVMVVPVGPT 629
>sp|Q9D0R2|SYTC_MOUSE Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 722
Score = 351 bits (901), Expect = 1e-96
Identities = 165/263 (62%), Positives = 204/263 (77%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
F EV TP IF + LW TSGHW HY E++F ++ E+ + LKPMNCP HCL+F H+ R
Sbjct: 368 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPRSW 426
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
+LPLRLADFG LHR E S +L GLTR+R+F QDDAHIFC +QIE EI+G LDFL VY
Sbjct: 427 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVY 486
Query: 363 GILNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDIS 542
+ F + L LSTRP +FLGDIE W+ AE+QL+ SL++FG+ W LN GDGAFYGPKIDI
Sbjct: 487 SVFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQ 546
Query: 543 IKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILIE 722
IKDA+ R++QCATIQLDFQLPI+F+L Y ++ +RPVI+HRAILGSVER++AIL E
Sbjct: 547 IKDAIGRYHQCATIQLDFQLPIRFNLTY-VSHDGDDKKRPVIVHRAILGSVERMIAILTE 605
Query: 723 SNGGKWPFWLNPRQILVVPVAET 791
+ GGKWPFWL+PRQ++VVPV T
Sbjct: 606 NYGGKWPFWLSPRQVMVVPVGPT 628
>sp|Q5XHY5|SYTC_RAT Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 695
Score = 351 bits (901), Expect = 1e-96
Identities = 165/263 (62%), Positives = 204/263 (77%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
F EV TP IF + LW TSGHW HY E++F ++ E+ + LKPMNCP HCL+F H+ R
Sbjct: 341 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPRSW 399
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
+LPLRLADFG LHR E S +L GLTR+R+F QDDAHIFC +QIE EI+G LDFL VY
Sbjct: 400 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVY 459
Query: 363 GILNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDIS 542
+ F + L LSTRP +FLGDIE W+ AE+QL+ SL++FG+ W LN GDGAFYGPKIDI
Sbjct: 460 SVFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQ 519
Query: 543 IKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILIE 722
IKDA+ R++QCATIQLDFQLPI+F+L Y ++ +RPVI+HRAILGSVER++AIL E
Sbjct: 520 IKDAIGRYHQCATIQLDFQLPIRFNLTY-VSHDGDDKKRPVIVHRAILGSVERMIAILTE 578
Query: 723 SNGGKWPFWLNPRQILVVPVAET 791
+ GGKWPFWL+PRQ++VVPV T
Sbjct: 579 NYGGKWPFWLSPRQVMVVPVGPT 601
>sp|O04630|SYTM_ARATH Threonyl-tRNA synthetase, mitochondrial precursor (Threonine--tRNA
ligase) (ThrRS)
Length = 709
Score = 330 bits (845), Expect = 4e-90
Identities = 150/276 (54%), Positives = 208/276 (75%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
+ EV TP ++ ELW+TSGH D+Y++++F +++ +E + LKPMNCP HCLIF H++R
Sbjct: 363 YTEVITPNMYNMELWQTSGHADNYKDNMFTFNIEKQE-FGLKPMNCPGHCLIFQHRVRSY 421
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
+LP+RLADFG LHR E S +L+GLTR+R+F QDDAHIFC +Q++ E++G L+F++YVY
Sbjct: 422 RELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKGEVQGVLEFIDYVY 481
Query: 363 GILNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDIS 542
+ F Y+L LSTRP ++LGD+E WD AE LK +++ FGK LN GDGAFYGPKIDI+
Sbjct: 482 KVFGFTYELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNEGDGAFYGPKIDIT 541
Query: 543 IKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILIE 722
+ DAM+R +QCAT+QLDFQLPI+F+L+Y + RPV+IHRA+LGSVER+ AIL+E
Sbjct: 542 VSDAMNRKFQCATLQLDFQLPIRFNLEYAA-EDEAKKSRPVMIHRAVLGSVERMFAILLE 600
Query: 723 SNGGKWPFWLNPRQILVVPVAETFANMRLKCVSKLK 830
GKWPFW++PRQ +V P++E K ++K
Sbjct: 601 HYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIK 636
>sp|P52709|SYTC_CAEEL Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 725
Score = 323 bits (829), Expect = 3e-88
Identities = 157/264 (59%), Positives = 191/264 (72%), Gaps = 1/264 (0%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
F EV TP ++ +LW+TSGHW HY E +FKI ++ EE + LKPMNCP HCL+F H
Sbjct: 368 FTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGHMPHTY 426
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
+LP R ADFG LHR E S +L GLTR+R+F QDDAHIFCR DQI +EI+ LDFL Y Y
Sbjct: 427 NELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAY 486
Query: 363 -GILNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDI 539
+ F + L LSTRP FLG+IE WD AE L +L+ G+ W LN GDGAFYGPKIDI
Sbjct: 487 EKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNALNASGRKWVLNPGDGAFYGPKIDI 546
Query: 540 SIKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILI 719
+I+DA+ R +QCATIQLDFQLP +FDL Y G +RPV+IHRA+LGSVER+ AIL
Sbjct: 547 TIQDALKRNFQCATIQLDFQLPNQFDLSYF--DEKGEKQRPVMIHRAVLGSVERMTAILT 604
Query: 720 ESNGGKWPFWLNPRQILVVPVAET 791
ES GGKWPFWL+PRQ ++ V E+
Sbjct: 605 ESYGGKWPFWLSPRQCKIITVHES 628
>sp|P04801|SYTC_YEAST Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 734
Score = 321 bits (823), Expect = 1e-87
Identities = 149/259 (57%), Positives = 199/259 (76%), Gaps = 1/259 (0%)
Frame = +3
Query: 9 EVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQSED 188
EV TP ++ ++LW+TSGHW +Y+E++F ++ +E + LKPMNCP HCL+F + R +
Sbjct: 378 EVITPNMYNSKLWETSGHWANYKENMFTFEVE-KETFGLKPMNCPGHCLMFKSRERSYRE 436
Query: 189 LPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVYGI 368
LP R+ADFG +HR E S +L+GLTR+R+F QDDAHIFC +DQIE EIE +FL Y+YG+
Sbjct: 437 LPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTHDQIESEIENIFNFLQYIYGV 496
Query: 369 LNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDISIK 548
F++ + LSTRP +++G IE WD AE +L+ +L K+G W +N+GDGAFYGPKIDI I
Sbjct: 497 FGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDGAFYGPKIDIMIS 556
Query: 549 DAMDRFYQCATIQLDFQLPIKFDLKYLI-NQSPGCSERPVIIHRAILGSVERLLAILIES 725
DA+ R++QCATIQLDFQLP +F+L++ +Q ERPV+IHRAILGSVER+ AIL E
Sbjct: 557 DALRRWHQCATIQLDFQLPNRFELEFKSKDQDSESYERPVMIHRAILGSVERMTAILTEH 616
Query: 726 NGGKWPFWLNPRQILVVPV 782
GKWPFWL+PRQ+LVVPV
Sbjct: 617 FAGKWPFWLSPRQVLVVPV 635
>sp|P87144|SYTC_SCHPO Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase)
(ThrRS)
Length = 703
Score = 311 bits (798), Expect = 1e-84
Identities = 151/279 (54%), Positives = 195/279 (69%), Gaps = 13/279 (4%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQS 182
+ EV TP ++ LWKTSGHW++Y E++F ++ E+ Y LKPMNCP HC++F + R
Sbjct: 337 YQEVITPNMYNVNLWKTSGHWNNYSENMFSFDIEKEK-YALKPMNCPGHCVMFKSRDRSY 395
Query: 183 EDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVY 362
DLP R+ADFG LHR E S +L+GLTR+R+F QDDAHIFC DQ+ EIEG DFL VY
Sbjct: 396 RDLPWRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTPDQVRSEIEGCFDFLKEVY 455
Query: 363 GILNFDYDLCLSTRPLE-FLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDI 539
G F + L LSTRP E +LGD+ WD AE QLK +LD G W LN+GDGAFYGPKIDI
Sbjct: 456 GTFGFTFHLELSTRPEEKYLGDLATWDKAEAQLKAALDASGYKWELNAGDGAFYGPKIDI 515
Query: 540 SIKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSE------------RPVIIHRAI 683
++ DA+ R +QCATIQLDFQLP +F L++ +P +E RPV++HRAI
Sbjct: 516 TVFDALKRQHQCATIQLDFQLPERFQLEF---HAPASAEEAKESGNNNKYTRPVMVHRAI 572
Query: 684 LGSVERLLAILIESNGGKWPFWLNPRQILVVPVAETFAN 800
LGS+ER++AIL E GKWPFW++PRQ+ ++PV+ N
Sbjct: 573 LGSLERMIAILTEHYAGKWPFWMSPRQVCIIPVSAAAYN 611
>sp|P07236|SYTM_YEAST Threonyl-tRNA synthetase, mitochondrial precursor (Threonine--tRNA
ligase) (ThrRS)
Length = 462
Score = 289 bits (740), Expect = 6e-78
Identities = 144/291 (49%), Positives = 192/291 (65%), Gaps = 12/291 (4%)
Frame = +3
Query: 3 FLEVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEM--YTLKPMNCPAHCLIFSHKIR 176
F EV TP I+K LW+ SGHW++Y + +FK+ EE Y LKPMNCP HCLIF K R
Sbjct: 86 FNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDR 145
Query: 177 QSEDLPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNY 356
+LPLR +DF LHR E S +L+GLTRLRKFHQDD HIFC Q++ EI +L ++
Sbjct: 146 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDI 205
Query: 357 VYGIL----------NFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSG 506
VY + +Y + STRP F+GD++ W+ AEQ LK L++ GK W LN G
Sbjct: 206 VYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPG 265
Query: 507 DGAFYGPKIDISIKDAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAIL 686
DGAFYGPK+DI + D + + +Q ATIQLDFQLP +FDLK+ +RP++IHRA
Sbjct: 266 DGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKF--KDQDNSYKRPIMIHRATF 323
Query: 687 GSVERLLAILIESNGGKWPFWLNPRQILVVPVAETFANMRLKCVSKLKRKI 839
GS+ER +A+LI+SN G+WPFWLNP Q +++PV T +L + L++K+
Sbjct: 324 GSIERFMALLIDSNEGRWPFWLNPYQAVIIPV-NTKNVQQLDMCTALQKKL 373
>sp|Q67LA3|SYT_SYMTH Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 651
Score = 286 bits (733), Expect = 4e-77
Identities = 134/274 (48%), Positives = 194/274 (70%)
Frame = +3
Query: 9 EVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQSED 188
EV+TP I ++L++TSGHW HY++++F+I + ++ T KPMNCP HC+++ +IR D
Sbjct: 294 EVSTPWIVSSKLYETSGHWQHYRQNMFEIRAEDQDFAT-KPMNCPCHCVLYKSQIRSYRD 352
Query: 189 LPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVYGI 368
LPL++A++G L R+E S +L+GL R+R FHQDDAH+F R DQIE++I + ++ +YG
Sbjct: 353 LPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIREVIGLVDTIYGT 412
Query: 369 LNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDISIK 548
L +Y++ LSTRP +F+GDIE W+ AE L R+LD G+ + LN GDGAFYGPK+D +
Sbjct: 413 LGLEYEIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVT 472
Query: 549 DAMDRFYQCATIQLDFQLPIKFDLKYLINQSPGCSERPVIIHRAILGSVERLLAILIESN 728
DA+ R +QCAT+QLDFQLPIKFDL Y+ G RPV+IHRAI+G++ER + IL E
Sbjct: 473 DALGRKWQCATVQLDFQLPIKFDLTYI--GEDGKEHRPVMIHRAIMGTLERFIGILTEHY 530
Query: 729 GGKWPFWLNPRQILVVPVAETFANMRLKCVSKLK 830
G +P W+ P Q V+P+ + + V+KL+
Sbjct: 531 AGNFPLWMAPVQARVLPITDRHHAYAGEVVAKLQ 564
>sp|P18256|SYT2_BACSU Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
Length = 638
Score = 276 bits (706), Expect = 5e-74
Identities = 133/277 (48%), Positives = 187/277 (67%), Gaps = 2/277 (0%)
Frame = +3
Query: 9 EVTTPQIFKNELWKTSGHWDHYQESLFKISLKSEEMYTLKPMNCPAHCLIFSHKIRQSED 188
EV TP + LW+ SGHWDHY+++++ S + + +KPMNCP H LIF + + D
Sbjct: 294 EVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRD 352
Query: 189 LPLRLADFGALHRYEHSTSLNGLTRLRKFHQDDAHIFCRYDQIEKEIEGTLDFLNYVYGI 368
LP+R+A+FG +HR+E+S +LNG+ R+R F QDDAHIF R DQIE EI+ + ++ VY
Sbjct: 353 LPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLIDEVYRT 412
Query: 369 LNFDYDLCLSTRPLEFLGDIEQWDLAEQQLKRSLDKFGKVWSLNSGDGAFYGPKIDISIK 548
F+Y + LSTRP + LGD W+ +E+ L R L++ G + +N GDGAFYGPKID IK
Sbjct: 413 FGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDGAFYGPKIDFHIK 472
Query: 549 DAMDRFYQCATIQLDFQLPIKFDLKYL--INQSPGCSERPVIIHRAILGSVERLLAILIE 722
DA+ R +QCATIQLDFQ+P KFDL Y+ +N+ RPV+IHRA+ GS++R ILIE
Sbjct: 473 DALKRSHQCATIQLDFQMPEKFDLTYINELNE----KVRPVVIHRAVFGSIDRFFGILIE 528
Query: 723 SNGGKWPFWLNPRQILVVPVAETFANMRLKCVSKLKR 833
GG +P WL P Q+ ++PV+ + K ++LK+
Sbjct: 529 HYGGAFPVWLAPIQVQIIPVSHVHLDYCRKVQAELKQ 565
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,889,286
Number of Sequences: 369166
Number of extensions: 1886720
Number of successful extensions: 5593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5077
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)