Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A24
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13989|YEG7_SCHPO Protein C26H5.07c in chromosome I 63 9e-10
sp|P32857|PTM1_YEAST Protein PTM1 precursor 52 2e-06
sp|P38745|YHB7_YEAST Hypothetical 61.2 kDa protein in APM2-... 51 5e-06
sp|Q8EUH0|RRF_MYCPE Ribosome recycling factor (Ribosome rel... 32 1.7
sp|P59541|T2R47_HUMAN Taste receptor type 2 member 47 (T2R47) 32 2.2
sp|Q646C1|T2R47_PANTR Taste receptor type 2 member 47 (T2R47) 30 6.4
sp|Q646E2|T2R47_PANPA Taste receptor type 2 member 47 (T2R47) 30 6.4
sp|Q03263|YM8M_YEAST Hypothetical transport protein YMR279C 30 8.3
>sp|O13989|YEG7_SCHPO Protein C26H5.07c in chromosome I
Length = 505
Score = 63.2 bits (152), Expect = 9e-10
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Frame = +2
Query: 59 LLMIVCIGYGIVKQRLGPAMRK---IIGVGXXXXXXXXVEGYIRVLKPEAFQTKYSLVSE 229
LL+IV +GY IV LG +RK + G+ +I E+ ++ +
Sbjct: 267 LLLIVSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSSLFISPSNKESLVILFA--AP 324
Query: 230 IILVVLDAIILWWSFSYLIQTIQQMRMKHNVVKFNLYRHFSNILIIVVIASAIFMIWALY 409
+ L+ L A+ LW + L TI+ +R++ VK +Y ++ ++A A +
Sbjct: 325 VFLITLFAMFLWIVLA-LNNTIRDLRIRKQTVKAQMYTRLWIVICFGIVAYASIVAANAI 383
Query: 410 VF----KFSVCETHWKEKW-INEAFWHILFSIVLLTIMILWRPSKNSQRYAYS 553
+ + + +WK W +N + IL I++LTI+ LWRP++N++R+A S
Sbjct: 384 LIGIYGQMNYYLKYWKLLWFLNYGYTDILVLILMLTILYLWRPTENNRRFAMS 436
>sp|P32857|PTM1_YEAST Protein PTM1 precursor
Length = 531
Score = 52.4 bits (124), Expect = 2e-06
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Frame = +2
Query: 8 MLIAETVSCIKRMLARILLMIVCIGYGIVKQRLGPAMRKIIGVGXXXXXXXXVEGYIRVL 187
M+ ++ K + LL+I+ +GYGIV +L + + + + I
Sbjct: 265 MVFLSILTAGKVTFSFFLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGFLI--- 321
Query: 188 KPEAFQTKYSLVSEIILVVLDAIILWWSFSY------LIQTIQQMRMKHNVVKFNLYRHF 349
+++ T S +IL+ L + L Y + +T+ ++ + +VK N+Y+
Sbjct: 322 --QSYLTDMEAPSPLILITLIPMALALIIFYYMIIRSMTKTVIYLKEQRQIVKLNMYKK- 378
Query: 350 SNILIIVVIASAIFMIWALYVFKF--------SVCETHWKEKWINEAFWHIL-FSIVLLT 502
L+ ++ AS + ++ V F + E +W+ ++ FW L + IV +T
Sbjct: 379 ---LLYIIYASFLSVLAGSIVSSFIYVGMNTIDMIEKNWRSRFFVTDFWPTLVYFIVFVT 435
Query: 503 IMILWRPSKNSQRYAYSPLL 562
I LWRP+ S A S L
Sbjct: 436 IAFLWRPTDTSYMLAASQQL 455
>sp|P38745|YHB7_YEAST Hypothetical 61.2 kDa protein in APM2-DUR3 intergenic region
precursor
Length = 532
Score = 50.8 bits (120), Expect = 5e-06
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Frame = +2
Query: 8 MLIAETVSCIKRMLARILLMIVCIGYGIVKQRLGPAMRKIIGVGXXXXXXXXVEGYIRVL 187
M+ S K +L +++ +GYGIV +L + + + V ++
Sbjct: 262 MVFISIFSAGKMTFTLLLALLISLGYGIVYPKLDRTLLRRCQIFAIFTFAVCVAFLVQKY 321
Query: 188 KPEAFQTKYSLVSEIILVVLDAIILWWSFSYLI-----QTIQQMRMKHNVVKFNLYRHFS 352
Q SL + I++ + ++ ++F YL +T+ +R ++ VVK N+YR
Sbjct: 322 S----QNSESLSNLILITAIPLVLCLFAFYYLTLSSMNKTMTYLREQNQVVKLNMYRK-- 375
Query: 353 NILIIVVIASAIFMIWALYVFKFS--------VCETHWKEKWINEAFW-HILFSIVLLTI 505
LII+ S + L V F+ + E +WK +++ W ++ +V +
Sbjct: 376 --LIILCYISLFILFLGLLVSTFAYVGMDTVDMIEQYWKTEFLITDTWPSFVYFLVFVIF 433
Query: 506 MILWRPSKNSQRYAYS 553
WRP+ S A S
Sbjct: 434 AFFWRPTSTSYLLACS 449
>sp|Q8EUH0|RRF_MYCPE Ribosome recycling factor (Ribosome releasing factor) (RRF)
Length = 183
Score = 32.3 bits (72), Expect = 1.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 629 ELRKPSKEHQHQKKVDKKTAEDDLKWIEDNI 721
E+R K+ H+ K DK+ ED+LKW E+++
Sbjct: 128 EIRNIRKDVHHKIKDDKELREDELKWYEEDL 158
>sp|P59541|T2R47_HUMAN Taste receptor type 2 member 47 (T2R47)
Length = 319
Score = 32.0 bits (71), Expect = 2.2
Identities = 16/102 (15%), Positives = 47/102 (46%)
Frame = +2
Query: 173 YIRVLKPEAFQTKYSLVSEIILVVLDAIILWWSFSYLIQTIQQMRMKHNVVKFNLYRHFS 352
Y L P + + + + + V + W + S + + ++ N++ + R
Sbjct: 67 YATQLNPAFYSVEVRITAYNVWAVTNHFSSWLATSLSMFYLLRIANFSNLIFLRIKRRVK 126
Query: 353 NILIIVVIASAIFMIWALYVFKFSVCETHWKEKWINEAFWHI 478
++++++++ +F++ L+V ++ ET W +++ W I
Sbjct: 127 SVVLVILLGPLLFLVCHLFVI--NMDETVWTKEYEGNVTWKI 166
>sp|Q646C1|T2R47_PANTR Taste receptor type 2 member 47 (T2R47)
Length = 319
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/102 (15%), Positives = 46/102 (45%)
Frame = +2
Query: 173 YIRVLKPEAFQTKYSLVSEIILVVLDAIILWWSFSYLIQTIQQMRMKHNVVKFNLYRHFS 352
Y L P + + + + V + W + S + + ++ N++ + R
Sbjct: 67 YATQLNPAFYSVEVRITVYNVWAVTNHFSSWLATSLSMFYLLKIANFSNLIFLRIKRRVK 126
Query: 353 NILIIVVIASAIFMIWALYVFKFSVCETHWKEKWINEAFWHI 478
++++++++ +F++ L+V ++ ET W +++ W I
Sbjct: 127 SVVLVILLGPLLFLVCHLFVI--NMDETIWTKEYEGNMTWKI 166
>sp|Q646E2|T2R47_PANPA Taste receptor type 2 member 47 (T2R47)
Length = 319
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/102 (15%), Positives = 46/102 (45%)
Frame = +2
Query: 173 YIRVLKPEAFQTKYSLVSEIILVVLDAIILWWSFSYLIQTIQQMRMKHNVVKFNLYRHFS 352
Y L P + + + + V + W + S + + ++ N++ + R
Sbjct: 67 YATQLNPAFYSVEVRITVYNVWAVTNHFSSWLATSLSMFYLLKIANFSNLIFLRIKRRVK 126
Query: 353 NILIIVVIASAIFMIWALYVFKFSVCETHWKEKWINEAFWHI 478
++++++++ +F++ L+V ++ ET W +++ W I
Sbjct: 127 SVVLVILLGPLLFLVCHLFVI--NMDETIWTKEYEGNMTWKI 166
>sp|Q03263|YM8M_YEAST Hypothetical transport protein YMR279C
Length = 540
Score = 30.0 bits (66), Expect = 8.3
Identities = 19/81 (23%), Positives = 33/81 (40%)
Frame = +2
Query: 230 IILVVLDAIILWWSFSYLIQTIQQMRMKHNVVKFNLYRHFSNILIIVVIASAIFMIWALY 409
I+L+++ I L F Y + + + + K RH IL+ V + F IW Y
Sbjct: 299 IVLLIISVIFLVAFFVYESKYAEVPLLPRAMTK---NRHMIMILLAVFLGWGSFGIWTFY 355
Query: 410 VFKFSVCETHWKEKWINEAFW 472
F + H+ W ++
Sbjct: 356 YVSFQLNLRHYSPVWTGGTYF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,008,475
Number of Sequences: 369166
Number of extensions: 1672578
Number of successful extensions: 4203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4195
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)