Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A23
(543 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05085|ARGR2_YEAST Arginine metabolism regulation protei... 33 0.58
sp|O15027|K0310_HUMAN Protein KIAA0310 33 0.58
sp|P24361|VF09_VACCV Protein F9 32 1.3
sp|P68453|VF09_VACCP Protein F9 >gi|55977546|sp|P68452|VF09... 32 1.3
sp|P33869|VF09_VARV Protein F9 31 2.2
sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha ... 30 2.9
sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltran... 30 2.9
sp|O97939|ENAM_PIG Enamelin precursor [Contains: 89 kDa ena... 30 2.9
sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltran... 30 3.8
sp|Q9MZV8|MC5R_PIG Melanocortin-5 receptor 29 6.5
>sp|P05085|ARGR2_YEAST Arginine metabolism regulation protein II
Length = 880
Score = 32.7 bits (73), Expect = 0.58
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 259 QYAKPTQFQTYGQIFPKNNRPVFREINNVTRKPEATKGNIEPVSYG---IYHSPSYEEPV 429
+++KP QF YG P+N+ ++ +P+ + NI+ V Y +YH +E
Sbjct: 56 RWSKPMQFDPYGVPIPQNSPATTTNLSGSVDEPQYQRRNIDFVRYDEEYVYHEDMDDELT 115
Query: 430 RINRFPPL 453
++ PP+
Sbjct: 116 MLHT-PPI 122
>sp|O15027|K0310_HUMAN Protein KIAA0310
Length = 2179
Score = 32.7 bits (73), Expect = 0.58
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Frame = +1
Query: 13 PMQFMPPPLYEIGSIWIPKLNHIDVYNSSGVDYCQGGWRKWNSAGHWDMHAMSSTAVEPD 192
P Q P Y S W + ++ Y SS DY GHWD + S+ +P
Sbjct: 1056 PRQGYPEGYYSSKSGWSSQSDYYASYYSSQYDY--------GDPGHWDRYHYSARVRDPR 1107
Query: 193 WYHR-----------KREYIRGAD---QKVMNWHYD 258
Y R +RE+ D ++ NW YD
Sbjct: 1108 TYDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWRYD 1143
>sp|P24361|VF09_VACCV Protein F9
Length = 212
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 492 VPNKNVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 355
V + N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 155 VKSLNKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P68453|VF09_VACCP Protein F9
sp|P68452|VF09_VACCC Protein F9
Length = 212
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 492 VPNKNVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 355
V + N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 155 VKSLNKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P33869|VF09_VARV Protein F9
Length = 212
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 480 NVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 355
N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 159 NKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha chain (Nitrate reductase A
alpha subunit) (Quinol-nitrate oxidoreductase alpha
subunit)
Length = 1247
Score = 30.4 bits (67), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 337 NNVTRKPEATKGNIEPVSYGIYHSPSYEEPVRINRFPPLHDPKHK*NIFIWYSNRL 504
N +T EA K + PV Y + E +R P + H N+FIW SN L
Sbjct: 665 NPLTIAGEAEKAGMNPVDYTV--KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLL 718
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase)
Length = 429
Score = 30.4 bits (67), Expect = 2.9
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 QYAKPTQFQTYGQIFPKNNR--PVFREINNVTRKPEATKGNIEPVSYGIYHSPSYEEPVR 432
Q A PTQ+Q +I NN+ P++ +N + G +E Y P Y + VR
Sbjct: 154 QNAYPTQWQ---RIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVR 210
Query: 433 INRFPPLH 456
+ P+H
Sbjct: 211 LETPAPVH 218
>sp|O97939|ENAM_PIG Enamelin precursor [Contains: 89 kDa enamelin; 142 kDa enamelin;
155 kDa enamelin; 56 kDa enamelin; 32 kDa enamelin; 25
kDa enamelin; 34 kDa enamelin]
Length = 1142
Score = 30.4 bits (67), Expect = 2.9
Identities = 26/111 (23%), Positives = 42/111 (37%)
Frame = +1
Query: 7 HYPMQFMPPPLYEIGSIWIPKLNHIDVYNSSGVDYCQGGWRKWNSAGHWDMHAMSSTAVE 186
HYPM P P I N D + +G ++ G R WDM +S
Sbjct: 631 HYPMN-TPDPKETI------PYNEEDPIDPTGDEHFPGQSR-------WDMEELSFKEDP 676
Query: 187 PDWYHRKREYIRGADQKVMNWHYDQYAKPTQFQTYGQIFPKNNRPVFREIN 339
++ +Y ++ + + D +KP + YG+ +P N F N
Sbjct: 677 TVRHYEGEQYTSNQPKEYLPYSLDNPSKpreDFLYGEFYPWNPEENFPSYN 727
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase)
Length = 429
Score = 30.0 bits (66), Expect = 3.8
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 QYAKPTQFQTYGQIFPKNNR--PVFREINNVTRKPEATKGNIEPVSYGIYHSPSYEEPVR 432
Q A PTQ+Q I NN+ P++ +N + G +E Y P Y + VR
Sbjct: 154 QNAYPTQWQ---HIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVR 210
Query: 433 INRFPPLH 456
+ P+H
Sbjct: 211 LETPAPVH 218
>sp|Q9MZV8|MC5R_PIG Melanocortin-5 receptor
Length = 294
Score = 29.3 bits (64), Expect = 6.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 160 ACPSDLRCSIFASHLDNNLLHSNCKHLCDLV*ESIYYQFHKEEE 29
+CP +L CS F SH + L+ +C+ V + + Y F +E+
Sbjct: 255 SCPQNLYCSCFMSHFNMYLI----LIMCNSVIDPLIYAFRSQEK 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,387,739
Number of Sequences: 369166
Number of extensions: 1671394
Number of successful extensions: 4128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4127
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)