Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A19-2
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51798|CLCN7_HUMAN Chloride channel protein 7 (ClC-7) 82 4e-16
sp|P51799|CLCN7_RAT Chloride channel protein 7 (ClC-7) 81 7e-16
sp|O70496|CLCN7_MOUSE Chloride channel protein 7 (ClC-7) 81 7e-16
sp|P92941|CLCA_ARATH Chloride channel protein CLC-a (AtCLC-a) 65 6e-11
sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c (AtCLC-c) 62 4e-10
sp|P92942|CLCB_ARATH Chloride channel protein CLC-b (AtCLC-b) 58 6e-09
sp|P92943|CLCD_ARATH Chloride channel protein CLC-d (AtCLC-d) 56 3e-08
sp|Q9TT16|CLCN6_RABIT Chloride channel protein 6 (ClC-6) 55 4e-08
sp|O35454|CLCN6_MOUSE Chloride channel protein 6 (ClC-6) 54 9e-08
sp|P51797|CLCN6_HUMAN Chloride channel protein 6 (ClC-6) 54 1e-07
>sp|P51798|CLCN7_HUMAN Chloride channel protein 7 (ClC-7)
Length = 805
Score = 82.0 bits (201), Expect = 4e-16
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Frame = +2
Query: 5 ISRYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGF---VWCAI 175
I R+ I IG TGL A D ++ LAG KY++IK +K F+ F +W +
Sbjct: 124 IKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKGNIDK-FTEKGGLSFSLLLWATL 182
Query: 176 NAGLVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
NA V + S++V +I P+AAGSGIPQIKCFLNG+
Sbjct: 183 NAAFVLVGSVIVAFIEPVAAGSGIPQIKCFLNGV 216
>sp|P51799|CLCN7_RAT Chloride channel protein 7 (ClC-7)
Length = 803
Score = 81.3 bits (199), Expect = 7e-16
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Frame = +2
Query: 5 ISRYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGF---VWCAI 175
I R+ I IG TGL A D ++ LAG KY++IK +K F+ F +W +
Sbjct: 122 IKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKDNIDK-FTEKGGLSFSLLLWATL 180
Query: 176 NAGLVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
N+ V + S++V +I P+AAGSGIPQIKCFLNG+
Sbjct: 181 NSAFVLVGSVIVAFIEPVAAGSGIPQIKCFLNGV 214
>sp|O70496|CLCN7_MOUSE Chloride channel protein 7 (ClC-7)
Length = 803
Score = 81.3 bits (199), Expect = 7e-16
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Frame = +2
Query: 5 ISRYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGF---VWCAI 175
I R+ I IG TGL A D ++ LAG KY++IK +K F+ F +W +
Sbjct: 122 IKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKDNIDK-FTEKGGLSFSLLLWATL 180
Query: 176 NAGLVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
N+ V + S++V +I P+AAGSGIPQIKCFLNG+
Sbjct: 181 NSAFVLVGSVIVAFIEPVAAGSGIPQIKCFLNGV 214
>sp|P92941|CLCA_ARATH Chloride channel protein CLC-a (AtCLC-a)
Length = 775
Score = 64.7 bits (156), Expect = 6e-11
Identities = 34/90 (37%), Positives = 52/90 (57%)
Frame = +2
Query: 11 RYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGFVWCAINAGLV 190
++ + +G FTGL A + ++ +AGYK + +D + V+ N GL
Sbjct: 86 KWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGYYIAQD--RFWTGLMVFTGANLGLT 143
Query: 191 GIASILVVYIAPIAAGSGIPQIKCFLNGIN 280
+A++LVVY AP AAG GIP+IK +LNGI+
Sbjct: 144 LVATVLVVYFAPTAAGPGIPEIKAYLNGID 173
>sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c (AtCLC-c)
Length = 779
Score = 62.0 bits (149), Expect = 4e-10
Identities = 37/90 (41%), Positives = 52/90 (57%)
Frame = +2
Query: 11 RYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGFVWCAINAGLV 190
++A+ F IG TGL F + ++ +AG+K LI L K+ A F C N L
Sbjct: 95 KWALAFLIGLATGLVGFLNNLGVENIAGFKLLLIGNLMLKEKYFQAFFAFAGC--NLILA 152
Query: 191 GIASILVVYIAPIAAGSGIPQIKCFLNGIN 280
A+ L +IAP AAGSGIP++K +LNGI+
Sbjct: 153 TAAASLCAFIAPAAAGSGIPEVKAYLNGID 182
>sp|P92942|CLCB_ARATH Chloride channel protein CLC-b (AtCLC-b)
Length = 780
Score = 58.2 bits (139), Expect = 6e-09
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +2
Query: 11 RYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGFVWCAINAGLV 190
++ + +G FTGL A + ++ +AGYK + ++ + V N GL
Sbjct: 85 KWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGHFLTQE--RYVTGLMVLVGANLGLT 142
Query: 191 GIASILVVYIAPIAAGSGIPQIKCFLNGIN 280
+AS+L V AP AAG GIP+IK +LNG++
Sbjct: 143 LVASVLCVCFAPTAAGPGIPEIKAYLNGVD 172
>sp|P92943|CLCD_ARATH Chloride channel protein CLC-d (AtCLC-d)
Length = 792
Score = 55.8 bits (133), Expect = 3e-08
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 32 IGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSNVASTGF-VWCAINAGLVGIASIL 208
IG TGL+A + ++ AG+K+ L + +K + GF V+ IN LV ++ +
Sbjct: 83 IGIGTGLAAVFINLSVENFAGWKFALTFAIIQKSYF----AGFIVYLLINLVLVFSSAYI 138
Query: 209 VVYIAPIAAGSGIPQIKCFLNGIN 280
+ AP AAGSGIP+IK +LNGI+
Sbjct: 139 ITQFAPAAAGSGIPEIKGYLNGID 162
>sp|Q9TT16|CLCN6_RABIT Chloride channel protein 6 (ClC-6)
Length = 869
Score = 55.5 bits (132), Expect = 4e-08
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +2
Query: 5 ISRYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSN--VASTGFVWCAIN 178
+ ++ ++F IG TGL D+ + + K+ +++ E+ +A + N
Sbjct: 78 VVKWTVVFAIGVCTGLVGLFVDFFVQLFTQLKFGVVEASVEECSQKGCLALSLLELLGFN 137
Query: 179 AGLVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
V +AS+LV+ I P+AAGSGIP+IKC+LNG+
Sbjct: 138 LTFVFLASLLVL-IEPVAAGSGIPEIKCYLNGV 169
>sp|O35454|CLCN6_MOUSE Chloride channel protein 6 (ClC-6)
Length = 870
Score = 54.3 bits (129), Expect = 9e-08
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 11 RYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSN--VASTGFVWCAINAG 184
++ ++F IG TGL D+ + + K+ +++ E+ +A + N
Sbjct: 80 KWMVVFAIGVCTGLVGLFVDFSVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGFNLT 139
Query: 185 LVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
V +AS+LV+ I P+AAGSGIP+IKC+LNG+
Sbjct: 140 FVFLASLLVL-IEPVAAGSGIPEIKCYLNGV 169
>sp|P51797|CLCN6_HUMAN Chloride channel protein 6 (ClC-6)
Length = 869
Score = 53.5 bits (127), Expect = 1e-07
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 11 RYAILFFIGFFTGLSAFTFDYCIDILAGYKYKLIKILFEKDFSN--VASTGFVWCAINAG 184
++ ++F IG TGL D+ + + K+ +++ E+ +A + N
Sbjct: 80 KWMVVFAIGVCTGLVGLFVDFFVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGFNLT 139
Query: 185 LVGIASILVVYIAPIAAGSGIPQIKCFLNGI 277
V +AS+LV+ I P+AAGSGIP++KC+LNG+
Sbjct: 140 FVFLASLLVL-IEPVAAGSGIPEVKCYLNGV 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,337,077
Number of Sequences: 369166
Number of extensions: 574880
Number of successful extensions: 1927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)