Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A19-1
(430 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 pr... 81 8e-16
sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 pr... 81 8e-16
sp|Q9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 pr... 79 5e-15
sp|Q6AXF6|SIDT1_MOUSE SID1 transmembrane family member 1 pr... 78 9e-15
sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 prec... 78 9e-15
sp|Q9GZC8|SID1_CAEEL Systemic RNA interference defective pr... 64 2e-10
>sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 precursor
Length = 832
Score = 81.3 bits (199), Expect = 8e-16
Identities = 38/99 (38%), Positives = 56/99 (56%)
Frame = -1
Query: 430 ILMKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFY 251
I+MK+ E+ I + + + WG AL+ F + + WQ+TP+ SRE NRDCI L F+
Sbjct: 734 IIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFF 793
Query: 250 DIHDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
D HDIWH + L +DD + ++R+KI VF
Sbjct: 794 DDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF 832
>sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 precursor
Length = 832
Score = 81.3 bits (199), Expect = 8e-16
Identities = 38/99 (38%), Positives = 56/99 (56%)
Frame = -1
Query: 430 ILMKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFY 251
I+MK+ E+ I + + + WG AL+ F + + WQ+TP+ SRE NRDCI L F+
Sbjct: 734 IIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFF 793
Query: 250 DIHDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
D HDIWH + L +DD + ++R+KI VF
Sbjct: 794 DDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF 832
>sp|Q9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 precursor
Length = 827
Score = 78.6 bits (192), Expect = 5e-15
Identities = 36/99 (36%), Positives = 56/99 (56%)
Frame = -1
Query: 430 ILMKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFY 251
I+MK+ SEK + + + + W ALY F ++ + W+ TP+ SRE+NR+CI L F+
Sbjct: 729 IIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLDFF 788
Query: 250 DIHDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
D HDIWH + L +DD + + R++I VF
Sbjct: 789 DDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF 827
>sp|Q6AXF6|SIDT1_MOUSE SID1 transmembrane family member 1 precursor
Length = 827
Score = 77.8 bits (190), Expect = 9e-15
Identities = 35/99 (35%), Positives = 56/99 (56%)
Frame = -1
Query: 430 ILMKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFY 251
I+MK+ SEK + + + + W ALY F ++ + W+ TP+ SRE+NR+C+ L F+
Sbjct: 729 IIMKLRSSEKVLPLPVFCIAATAVVWAAALYFFFQNLSSWEGTPAESREKNRECVLLDFF 788
Query: 250 DIHDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
D HDIWH + L +DD + + R++I VF
Sbjct: 789 DDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF 827
>sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 precursor
Length = 831
Score = 77.8 bits (190), Expect = 9e-15
Identities = 35/99 (35%), Positives = 56/99 (56%)
Frame = -1
Query: 430 ILMKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFY 251
I+MK+ SEK + + + + W ALY F ++ + W+ TP+ SRE+NR+C+ L F+
Sbjct: 733 IIMKLRSSEKVLPLPVFCIVATAVVWAAALYFFFQNLSSWEGTPAESREKNRECVLLGFF 792
Query: 250 DIHDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
D HDIWH + L +DD + + R++I VF
Sbjct: 793 DDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF 831
>sp|Q9GZC8|SID1_CAEEL Systemic RNA interference defective protein 1 precursor (Systemic
RNAi enabling protein)
Length = 776
Score = 63.5 bits (153), Expect = 2e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = -1
Query: 424 MKVIHSEKFHKISIAYVFIAVICWGCALYCFIEHPTDWQRTPSGSREENRDCIFLKFYDI 245
MKV+HSE+ + ++++ W A + F + TDW R+ + SR N+ C+ L F+
Sbjct: 680 MKVLHSERITSKAKLCGALSLLAWAVAGFFFFQDDTDWTRSAAASRALNKPCLLLGFFGS 739
Query: 244 HDIWHXXXXXXXXXXXMTLQNIDDCIIKIERNKISVF 134
HD+WH + + +DD +I + I++F
Sbjct: 740 HDLWHIFGALAGLFTFIFVSFVDDDLINTRKTSINIF 776
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,713,382
Number of Sequences: 369166
Number of extensions: 762224
Number of successful extensions: 1286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)