Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A17
(391 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mi... 65 5e-11
sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mi... 61 9e-10
sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitoch... 52 3e-07
sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitoch... 41 0.001
sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain prot... 37 0.018
sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ 35 0.053
sp|P45555|DNAJ_STAAU Chaperone protein dnaJ 34 0.090
sp|O69269|DNAJ_BACSH Chaperone protein dnaJ 34 0.090
sp|P63972|DNAJ_STAAW Chaperone protein dnaJ >gi|62900218|sp... 34 0.090
sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ 34 0.090
>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (hTid-1)
Length = 480
Score = 65.1 bits (157), Expect = 5e-11
Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAEQD-ESAGMINGVTMTANGKQAIDDT 175
+NSYGYGDHY++IKI+ KRLT Q++L+L+ AE + + G +NGVT+T++G +D +
Sbjct: 396 INSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDETDVEGTVNGVTLTSSGGSTMDSS 454
>sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (mTid-1)
Length = 480
Score = 60.8 bits (146), Expect = 9e-10
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAEQD-ESAGMINGVTMTANGKQAIDDT 175
+NSYGYGDHY++IKI+ KRL+ Q+ L+L+ AE + + G +NGVT T+ G + +D +
Sbjct: 396 INSYGYGDHYIHIKIRVPKRLSSRQQNLILSYAEDETDVEGTVNGVTHTSTGGRTMDSS 454
>sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID58)
Length = 529
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/54 (44%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAE-QDESAGMINGVTMTANGKQ 160
VN++G+GDHY++IKI+ K+L++ QRALL A AE ++++ G I+G+ +G +
Sbjct: 403 VNAHGHGDHYVHIKIEVPKKLSQEQRALLEAYAELEEDTPGQIHGMAQRKDGSK 456
>sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID56)
(TID50)
Length = 520
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKI--QPTKRLTETQRALLLALAE-QDESAGMINGVTMTANG-KQA 163
VN++G+GDHY+++KI K+L + + AL+ A AE ++++ G I+G+ +G KQA
Sbjct: 387 VNAHGHGDHYVHVKITVPSAKKLDKKRLALIEAYAELEEDTPGQIHGIANRKDGSKQA 444
>sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain protein 10)
Length = 456
Score = 36.6 bits (83), Expect = 0.018
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAEQDE-SAGMINGVTMTANGKQAIDDTD 178
++SYG GD Y++IK+ K LT Q+ ++LA A ++ G I G+ ++ +
Sbjct: 352 LHSYGNGDQYMHIKVTVPKYLTAEQKQIMLAWAATEQLKDGTIKGLEKNQKTEEKETKKN 411
Query: 179 QFLLSQ-IRMVLKQHENTDANQPTNKQDQQQHENPSEKLKK 298
+ S+ K+ A + Q++E EK+K+
Sbjct: 412 EEKKSEGASESQKRRSEPVAENAETIDENQENEGFFEKIKR 452
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ
Length = 373
Score = 35.0 bits (79), Expect = 0.053
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAEQDESAGMINGVTMTANGKQAIDDTDQ 181
V+ YGYGD ++NIK+ +L + Q+ LL AE ING + D +
Sbjct: 316 VHGYGYGDLFVNIKVVTPTKLNDRQKELLKEFAE-------INGENINEQSSNFKDRAKR 368
Query: 182 F 184
F
Sbjct: 369 F 369
>sp|P45555|DNAJ_STAAU Chaperone protein dnaJ
Length = 379
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAE 103
V+ YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 322 VHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
>sp|O69269|DNAJ_BACSH Chaperone protein dnaJ
Length = 368
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAE 103
V+ YG G+ Y+ +K+ ++LTE Q+ LL AE
Sbjct: 311 VHGYGMGNQYVTVKVMTPEKLTEKQKQLLREFAE 344
>sp|P63972|DNAJ_STAAW Chaperone protein dnaJ
sp|Q6G8Y8|DNAJ_STAAS Chaperone protein dnaJ
sp|P63971|DNAJ_STAAN Chaperone protein dnaJ
sp|P63970|DNAJ_STAAM Chaperone protein dnaJ
sp|Q5HFI1|DNAJ_STAAC Chaperone protein dnaJ
Length = 379
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAE 103
V+ YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 322 VHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ
Length = 379
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 2 VNSYGYGDHYLNIKIQPTKRLTETQRALLLALAE 103
V+ YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 322 VHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,218,791
Number of Sequences: 369166
Number of extensions: 563878
Number of successful extensions: 1946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)