Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A07
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein R... 35 0.076
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 33 0.29
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 33 0.29
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 32 1.1
sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine am... 31 1.4
sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein... 31 1.9
sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogent... 30 2.5
sp|O09173|HGD_MOUSE Homogentisate 1,2-dioxygenase (Homogent... 30 2.5
sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory s... 30 3.2
sp|P53274|YG36_YEAST Hypothetical 25.8 kDa protein in ASN2-... 30 3.2
>sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein REG1)
Length = 1014
Score = 35.4 bits (80), Expect = 0.076
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 172 KSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVNQND-EDST 348
KS + + +D +I N +G+NS G +E L K + V N S + N++ E+ST
Sbjct: 351 KSQHSDKKDNSTIPNP--VGENSNGGGDKGEEDLHLKSALHVQNNRSTAQSNKSILENST 408
Query: 349 HDEEANLRDYLSTNDDHQ 402
+D +ANL L++ D+++
Sbjct: 409 NDRKANLDQNLNSPDNNR 426
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 33.5 bits (75), Expect = 0.29
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 115 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 288
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 166 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 224
Query: 289 VEVGQNPSVEEVNQNDEDSTHDEEANLRDYLSTNDD 396
++ +E + ND++ T+DEE + D TNDD
Sbjct: 225 EVNDEDDVNDEEDTNDDEDTNDEE-DTNDDEDTNDD 259
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 33.5 bits (75), Expect = 0.29
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 115 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 288
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 83 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 141
Query: 289 VEVGQNPSVEEVNQNDEDSTHDEEANLRDYLSTNDD 396
++ +E + ND++ T+DEE + D TNDD
Sbjct: 142 EVNDEDDVNDEEDTNDDEDTNDEE-DTNDDEDTNDD 176
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 31.6 bits (70), Expect = 1.1
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 13 ESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEI 192
+S ++A +F N L +S++ YN++S NK L K ++S + + +
Sbjct: 435 DSESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFLFSAIKSNATKHK 488
Query: 193 RDQ--ISIENIKWIGQNSIGLLSNIKESLSA 279
R Q S+EN +G NS + + K S++A
Sbjct: 489 RTQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
>sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine amidase
Length = 233
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 115 KETLDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 261
K LDL FN + + LS+ +Q+++ I ++ I + S+G+LS+I
Sbjct: 133 KTVLDLQFNNFQKMEINLSRYIFQQLKKIIKLDKIN-LNYASLGILSSI 180
>sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
Length = 1010
Score = 30.8 bits (68), Expect = 1.9
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 36 PELLQQIESVCPSHVNRVLQSHVL 107
PE++QQ+E++C ++ VLQ HV+
Sbjct: 626 PEIIQQLENICLRIIDLVLQKHVI 649
>sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogentisicase) (Homogentisate
oxygenase) (Homogentisic acid oxidase)
Length = 445
Score = 30.4 bits (67), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 89 ATITCpreTRKRWILCSIKPSISTPPYQN 175
+ TCPR T KR L I PS+S P+++
Sbjct: 47 SAFTCPRSTNKRSWLYRILPSVSHKPFES 75
>sp|O09173|HGD_MOUSE Homogentisate 1,2-dioxygenase (Homogentisicase) (Homogentisate
oxygenase) (Homogentisic acid oxidase)
Length = 445
Score = 30.4 bits (67), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 89 ATITCpreTRKRWILCSIKPSISTPPYQN 175
+ TCPR T KR L I PS+S P+++
Sbjct: 47 SAFTCPRNTNKRSWLYRILPSVSHKPFES 75
>sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory subunit SDS22
Length = 338
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 97 HMSSG-NKET----LDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 261
H+SS NK T LDL FNK +HI + + + +EN+ ++ QNSI + N+
Sbjct: 104 HISSNVNKLTKLTSLDLSFNKIKHI---------KNLENLTDLENLYFV-QNSISKIENL 153
Query: 262 KESLSAKYKVEVGQN 306
S K +E+G N
Sbjct: 154 STLKSLK-NLELGGN 167
>sp|P53274|YG36_YEAST Hypothetical 25.8 kDa protein in ASN2-PHB1 intergenic region
Length = 230
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 146 PSISTPPYQNQHIKKFGIKYRLKTSSGLVKIR 241
P I+ P + H F +YRL+T +GLVK++
Sbjct: 120 PDITAPVTNSAHDAAFPEEYRLETETGLVKLK 151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,273,684
Number of Sequences: 369166
Number of extensions: 1073453
Number of successful extensions: 3498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3490
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)