Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A03
(324 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 207 6e-54
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 207 6e-54
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 207 6e-54
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 207 8e-54
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 201 4e-52
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 201 4e-52
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 201 6e-52
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 201 6e-52
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 199 2e-51
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 197 8e-51
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 207 bits (527), Expect = 6e-54
Identities = 101/106 (95%), Positives = 105/106 (99%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 207 bits (527), Expect = 6e-54
Identities = 101/106 (95%), Positives = 105/106 (99%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 207 bits (527), Expect = 6e-54
Identities = 101/106 (95%), Positives = 105/106 (99%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 207 bits (526), Expect = 8e-54
Identities = 100/106 (94%), Positives = 105/106 (99%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
SNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EEN
Sbjct: 38 SNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+AL+KGKKERPR+
Sbjct: 98 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 201 bits (511), Expect = 4e-52
Identities = 98/106 (92%), Positives = 104/106 (98%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEEN
Sbjct: 38 ANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGRSGHAVGDIPGVRFKIVKVANVSL AL+ GKKERPR+
Sbjct: 98 DEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 201 bits (511), Expect = 4e-52
Identities = 99/106 (93%), Positives = 103/106 (97%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLNFIEEN
Sbjct: 38 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLALYK KKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 201 bits (510), Expect = 6e-52
Identities = 98/106 (92%), Positives = 103/106 (97%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN
Sbjct: 38 ANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+AL+KGKKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 201 bits (510), Expect = 6e-52
Identities = 98/106 (92%), Positives = 103/106 (97%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 199 bits (505), Expect = 2e-51
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 197 bits (500), Expect = 8e-51
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +2
Query: 2 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEN 181
+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEEN
Sbjct: 38 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEEN 97
Query: 182 DEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 319
DEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 98 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,478,301
Number of Sequences: 369166
Number of extensions: 627228
Number of successful extensions: 2625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2398
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)