Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A02
(919 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 254 2e-67
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 253 5e-67
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 253 5e-67
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 250 3e-66
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 250 3e-66
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 250 4e-66
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 249 6e-66
sp|P55097|CATK_MOUSE Cathepsin K precursor 248 1e-65
sp|O35186|CATK_RAT Cathepsin K precursor 247 3e-65
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 246 8e-65
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 254 bits (650), Expect = 2e-67
Identities = 130/295 (44%), Positives = 189/295 (64%), Gaps = 7/295 (2%)
Frame = +1
Query: 1 LIIIEFTQFITSHLIINEEFNAEWQVFKTKFNKNYTA-IDELVRKTIWIENIKYIQHHNV 177
L ++ ++S L E + +W+++K + K Y + +DE+ R+ IW +N+K+I HN+
Sbjct: 4 LKVVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNL 63
Query: 178 KYDLGHHSHSLGINEFSDLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVD 345
+ LG H++ L +N D+T +E + L + + ND + Y+P PDS+D
Sbjct: 64 EASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTL-YIPDWE-GRTPDSID 121
Query: 346 WRTKGYVTNVKNQGQCGSCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGG 525
+R KGYVT VKNQGQCGSCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG
Sbjct: 122 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGG 181
Query: 526 WMNIAFEYI-SSHGIESEDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVA 702
+M AF+Y+ + GI+SED YPY + NC+++ + A C+G++ I NEK L AVA
Sbjct: 182 YMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVA 241
Query: 703 TVGPISVAIDVGY-SFQQYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
VGP+SVAID SFQ Y +GVYY+ C+ NHAVL VGYG++ G K+W++K
Sbjct: 242 RVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIK 296
Score = 30.0 bits (66), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWG +WG GYI M+++
Sbjct: 297 NSWGENWGNKGYILMARN 314
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 253 bits (646), Expect = 5e-67
Identities = 128/277 (46%), Positives = 182/277 (65%), Gaps = 6/277 (2%)
Frame = +1
Query: 52 EEFNAEWQVFKTKFNKNYT-AIDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
E + W+++K K Y +DE+ R+ IW +N+KYI HN++ LG H++ L +N
Sbjct: 20 EILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLG 79
Query: 229 DLTYKEF-EKLYLLSKNIEYNDGID--YLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 399
D+T +E +K+ L + ++ D Y+P PDSVD+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWE-GRAPDSVDYRKKGYVTPVKNQGQCGS 138
Query: 400 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIESE 576
CWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSE 198
Query: 577 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 753
D YPY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 199 DAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQF 258
Query: 754 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
Y +GVYY+ C+ NHAVL VGYG++ G+K+W++K
Sbjct: 259 YSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 295
Score = 30.0 bits (66), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWG +WG GYI M+++
Sbjct: 296 NSWGENWGNKGYILMARN 313
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 253 bits (646), Expect = 5e-67
Identities = 128/278 (46%), Positives = 183/278 (65%), Gaps = 7/278 (2%)
Frame = +1
Query: 52 EEFNAEWQVFKTKFNKNYTA-IDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
E + W+++K K Y + +DE+ R+ IW +N+KYI HN++ LG H++ L +N
Sbjct: 20 EILDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLG 79
Query: 229 DLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 396
D+T +E + L + + + ND + Y+P PDSVD+R KGYVT VKNQGQCG
Sbjct: 80 DMTNEEVVQKMTGLKVPASHSRSNDTL-YIPDWE-GRAPDSVDYRKKGYVTPVKNQGQCG 137
Query: 397 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIES 573
SCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+S
Sbjct: 138 SCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDS 197
Query: 574 EDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQ 750
ED YPY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 198 EDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQ 257
Query: 751 QYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
Y +GVYY+ C+ NHAVL VGYG++ G+K+W++K
Sbjct: 258 FYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 295
Score = 30.0 bits (66), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWG +WG GYI M+++
Sbjct: 296 NSWGENWGNKGYILMARN 313
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 250 bits (639), Expect = 3e-66
Identities = 126/278 (45%), Positives = 182/278 (65%), Gaps = 7/278 (2%)
Frame = +1
Query: 52 EEFNAEWQVFKTKFNKNYTA-IDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
E + +W+++K ++K Y + +DE+ R+ IW +N+K+I HN++ LG H++ L +N
Sbjct: 20 EILDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLG 79
Query: 229 DLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 396
D+T +E + L + ND + Y+P PDS+D+R KGYVT VKNQGQCG
Sbjct: 80 DMTSEEVVQKMTGLKVPPSRSHSNDTL-YIPDWE-GRTPDSIDYRKKGYVTPVKNQGQCG 137
Query: 397 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYIS-SHGIES 573
SCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+S
Sbjct: 138 SCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTNAFQYVQRNRGIDS 197
Query: 574 EDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQ 750
ED YPY + +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 198 EDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQ 257
Query: 751 QYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
Y +GVYY+ C NHAVL VGYG++ G+K+W++K
Sbjct: 258 FYSKGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIK 295
Score = 31.2 bits (69), Expect = 4.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWG SWG GYI M+++
Sbjct: 296 NSWGESWGNKGYILMARN 313
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 250 bits (639), Expect = 3e-66
Identities = 140/281 (49%), Positives = 182/281 (64%), Gaps = 15/281 (5%)
Frame = +1
Query: 67 EWQVFKTKFNKNYT-AIDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYK 243
EW FK + KNY +E R I+ EN I HN ++ G S L +N+++DL +
Sbjct: 28 EWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHH 87
Query: 244 EFEKL-----YLLSKNIEYND----GIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 396
EF +L Y L K + D G+ ++ P ++ LP SVDWRTKG VT VK+QG CG
Sbjct: 88 EFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHV-TLPKSVDWRTKGAVTAVKDQGHCG 146
Query: 397 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GI 567
SCWAFS+TG+LEGQHFRK VL ++SEQ LVDC TK N+GCNGG M+ AF YI + GI
Sbjct: 147 SCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGI 206
Query: 568 ESEDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-S 744
++E +YPY+A +C F+K V A +GF +I +EK +A AVATVGP+SVAID + S
Sbjct: 207 DTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES 266
Query: 745 FQQYKQGVYYEAKCDPTIQNHAVLVVGYGV-ENGHKYWLVK 864
FQ Y +GVY E +CD +H VLVVG+G E+G YWLVK
Sbjct: 267 FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVK 307
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 250 bits (638), Expect = 4e-66
Identities = 116/269 (43%), Positives = 172/269 (63%), Gaps = 4/269 (1%)
Frame = +1
Query: 70 WQVFKTKFNKNYTAIDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKEF 249
W +K +NK Y D+ R+ IW +N+K+IQ HN+++DLG +++LG+N+F+D+T++EF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 250 EKLYLLSKNIEYNDGIDYLPPLNIDN--LPDSVDWRTKGYVTNVKNQGQCGSCWAFSTTG 423
+ YL + +D + + P +N +PD +DWR GYVT VK+QG CGSCWAFSTTG
Sbjct: 81 KAKYLTEMS-RASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTG 139
Query: 424 SLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSHGIESEDNYPYQA 597
++EGQ+ + + + SEQQLVDC N+GC+GG M A++Y+ G+E+E +YPY A
Sbjct: 140 TMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYTA 199
Query: 598 KQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGYSFQQYKQGVYYE 777
+G C ++K VA G+ ++S +E +L V P +VA+DV F Y+ G+Y
Sbjct: 200 VEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQS 259
Query: 778 AKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
C P NHAVL VGYG + G YW+VK
Sbjct: 260 QTCSPLRVNHAVLAVGYGTQGGTDYWIVK 288
Score = 30.4 bits (67), Expect = 7.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWG WG GYI+M+++
Sbjct: 289 NSWGTYWGERGYIRMARN 306
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 249 bits (637), Expect = 6e-66
Identities = 133/272 (48%), Positives = 172/272 (63%), Gaps = 7/272 (2%)
Frame = +1
Query: 70 WQVFKTKFNKNYT-AIDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKE 246
W+ FK K+ + Y A ++ R+ I+ +N KYI+ N KY+ G + +L +N+F D+T +E
Sbjct: 20 WEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEE 79
Query: 247 FEKLYLLSKNIEYNDG--IDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWAFSTT 420
F + + NI + P VDWRTKG VT VK+QGQCGSCWAFSTT
Sbjct: 80 FNAV--MKGNIPRRSAPVSVFYPKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTT 137
Query: 421 GSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYI-SSHGIESEDNYPY 591
GSLEGQHF K L +++EQQLVDC GCNGGWMN AF+YI +++GI++E YPY
Sbjct: 138 GSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPY 197
Query: 592 QAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQGV 768
+A+ G+C FD + V A C G NI S +E L AV +GPISV ID + SFQ Y GV
Sbjct: 198 EARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGV 257
Query: 769 YYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
YYE C P+ +HAVL VGYG E G +WLVK
Sbjct: 258 YYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVK 289
Score = 31.6 bits (70), Expect = 3.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSW SWG GYIKMS++
Sbjct: 290 NSWATSWGDAGYIKMSRN 307
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 248 bits (634), Expect = 1e-65
Identities = 126/277 (45%), Positives = 178/277 (64%), Gaps = 6/277 (2%)
Frame = +1
Query: 52 EEFNAEWQVFKTKFNKNYTA-IDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
E + +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N
Sbjct: 20 EMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLG 79
Query: 229 DLTYKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 399
D+T +E + + + Y++ Y P +PDS+D+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGS 138
Query: 400 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESE 576
CWAFS+ G+LEGQ +K L +S Q LVDCVT+N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSE 198
Query: 577 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 753
D YPY + +C+++ + A C+G++ I NEK L AVA VGPISV+ID SFQ
Sbjct: 199 DAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQF 258
Query: 754 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
Y +GVYY+ CD NHAVLVVGYG + G K+W++K
Sbjct: 259 YSRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIK 295
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 247 bits (631), Expect = 3e-65
Identities = 124/277 (44%), Positives = 179/277 (64%), Gaps = 6/277 (2%)
Frame = +1
Query: 52 EEFNAEWQVFKTKFNKNYTA-IDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
E + +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N
Sbjct: 20 ETLDTQWELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLG 79
Query: 229 DLTYKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 399
D+T +E + + + +++ Y P +PDS+D+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLRVPPSRSFSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGS 138
Query: 400 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESE 576
CWAFS+ G+LEGQ +K L +S Q LVDCV++N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVSENYGCGGGYMTTAFQYVQQNGGIDSE 198
Query: 577 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 753
D YPY + +C+++ + A C+G++ I NEK L AVA VGP+SV+ID SFQ
Sbjct: 199 DAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQF 258
Query: 754 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVK 864
Y +GVYY+ CD NHAVLVVGYG + G+KYW++K
Sbjct: 259 YSRGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIK 295
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 246 bits (627), Expect = 8e-65
Identities = 132/280 (47%), Positives = 175/280 (62%), Gaps = 8/280 (2%)
Frame = +1
Query: 49 NEEFNAEWQVFKTKFNKNYTAIDELVRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 228
++ + +W +K + Y A +E R+ +W +N+K I+ HN +Y G H ++ +N F
Sbjct: 22 DQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFG 81
Query: 229 DLTYKEFEKLYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWA 408
D+T +EF ++ +N ++ G + PL +D LP SVDWR KGYVT VKNQ QCGSCWA
Sbjct: 82 DMTNEEFRQMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCWA 140
Query: 409 FSTTGSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GIESED 579
FS TG+LEGQ FRK L ++SEQ LVDC N GCNGG+M AF+Y+ + G++SE+
Sbjct: 141 FSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEE 200
Query: 580 NYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQY 756
+YPY A C + VAN GF + EK L AVATVGPISVA+D G+ SFQ Y
Sbjct: 201 SYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFY 260
Query: 757 KQGVYYEAKCDPTIQNHAVLVVGYGVE----NGHKYWLVK 864
K G+Y+E C +H VLVVGYG E N KYWLVK
Sbjct: 261 KSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
Score = 39.3 bits (90), Expect = 0.016
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 864 NSWGPSWGMNGYIKMSKD 917
NSWGP WG NGY+K++KD
Sbjct: 301 NSWGPEWGSNGYVKIAKD 318
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,421,227
Number of Sequences: 369166
Number of extensions: 2262744
Number of successful extensions: 7094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6503
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)