Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_P22
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 167 2e-41
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 167 2e-41
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 166 2e-41
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 166 3e-41
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 166 3e-41
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 165 5e-41
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 163 2e-40
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 162 3e-40
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 160 1e-39
sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein) 158 6e-39
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 167 bits (422), Expect = 2e-41
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 108 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI 167
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E+ + D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 168 MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMEL 227
Query: 361 HGDSATAITSTGE----IIERPDGHEPPIQTSV 447
HG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 228 HGEGSSSGKATGDETGAKVERADGYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 167 bits (422), Expect = 2e-41
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E+ + D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 172 MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMEL 231
Query: 361 HGDSATAITSTGE----IIERPDGHEPPIQTSV 447
HG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 232 HGEGSSSGKATGDETGAKVERADGYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 166 bits (421), Expect = 2e-41
Identities = 82/153 (53%), Positives = 110/153 (71%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E+ + D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 172 MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMEL 231
Query: 361 HGDSATAITSTGE----IIERPDGHEPPIQTSV 447
HG+ ++ +TG+ +ER DG+EPP+Q SV
Sbjct: 232 HGEGGSSGKTTGDETGAKVERADGYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 166 bits (420), Expect = 3e-41
Identities = 83/153 (54%), Positives = 108/153 (70%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E+ + D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 172 MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMEL 231
Query: 361 HGDSAT----AITSTGEIIERPDGHEPPIQTSV 447
HG+ + A TG +ER DG+EPP+Q SV
Sbjct: 232 HGEGGSSGKAAGDETGAKVERADGYEPPVQESV 264
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 166 bits (419), Expect = 3e-41
Identities = 86/154 (55%), Positives = 110/154 (71%), Gaps = 5/154 (3%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LRVF I FTKK + Q+KK YAQ Q+K+IR M E+
Sbjct: 112 SMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
++ E+SS D+KEVV KL DSIGKDI K C I+PL D + KVKV++KPK D+ KLM+L
Sbjct: 172 VSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMEL 231
Query: 361 HGDSAT----AITST-GEIIERPDGHEPPIQTSV 447
HG+ +T +TS GE ++R DG+EPP+ +V
Sbjct: 232 HGEGSTTTSKGVTSEGGEKVDRVDGYEPPVLQNV 265
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 165 bits (418), Expect = 5e-41
Identities = 82/149 (55%), Positives = 108/149 (72%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
S+VKKW T IE VKTTD + LRVFVIAFTKK+ Q+KK +Y + +I+ IR M
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
I E++ CD+KEVV KL DSIGKDI K CS ++PLQ+ +RKVK+I++PK+DL +L DL
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDL 229
Query: 361 HGDSATAITSTGEIIERPDGHEPPIQTSV 447
HGDS T + + GE ++RPD +EPP+Q V
Sbjct: 230 HGDSIT-VGADGEKVDRPDDYEPPVQQEV 257
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 163 bits (413), Expect = 2e-40
Identities = 82/153 (53%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E + D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 172 MTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMEL 231
Query: 361 HGDSATAITSTGE----IIERPDGHEPPIQTSV 447
HG+ A +G+ +ER DG+EPP+Q SV
Sbjct: 232 HGEGGGAGKPSGDEAGAKVERADGYEPPVQESV 264
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 162 bits (411), Expect = 3e-40
Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E+
Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEI 171
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
+ E+ + D+KEVV KL DS+GKDI K C I+PL D VRKVK+++KPK +L KLM+L
Sbjct: 172 MTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMEL 231
Query: 361 HGDSATAITS------TGEIIERPDGHEPPIQTSV 447
HG+ + TG +ER DG+EPPIQ +V
Sbjct: 232 HGEGGAGGAAKASGDDTGAKVERADGYEPPIQETV 266
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 160 bits (405), Expect = 1e-39
Identities = 85/155 (54%), Positives = 104/155 (67%), Gaps = 6/155 (3%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMV KWQT IEC DVKTTD F LRVF I FT K S +K YAQ QIK+IR M +
Sbjct: 115 SMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAI 174
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
I EI+S D+K VV+KL DSI KDI K C ++PL D +RKVKV++KP+ DL+ LM+L
Sbjct: 175 IKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMEL 234
Query: 361 HGDSA--TAITSTGE----IIERPDGHEPPIQTSV 447
HGD A STG ++ RP+G+EPP+Q SV
Sbjct: 235 HGDGGGKAAEVSTGAASGVVVVRPEGYEPPVQASV 269
>sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 158 bits (400), Expect = 6e-39
Identities = 75/154 (48%), Positives = 103/154 (66%), Gaps = 5/154 (3%)
Frame = +1
Query: 1 SMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREV 180
SMVKKWQT IE + KT D + LRVF I FT K +K YAQ Q++ IR M ++
Sbjct: 115 SMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDI 174
Query: 181 INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDL 360
I E+S D+K++V KL +DSI KDI K C I+PL D +RKVKV++KP+ D++KL++L
Sbjct: 175 ITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234
Query: 361 HGDSA-----TAITSTGEIIERPDGHEPPIQTSV 447
HGD ++S G +I+RP+G+EPP+Q SV
Sbjct: 235 HGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQESV 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,674,515
Number of Sequences: 369166
Number of extensions: 998283
Number of successful extensions: 2580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2564
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)