Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_O23
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9X2D7|SYV_THEMA Valyl-tRNA synthetase (Valine--tRNA lig... 97 2e-20
sp|P96142|SYV_THETH Valyl-tRNA synthetase (Valine--tRNA lig... 96 3e-20
sp|O67411|SYV_AQUAE Valyl-tRNA synthetase (Valine--tRNA lig... 96 3e-20
sp|P93736|SYV_ARATH Valyl-tRNA synthetase (Valine--tRNA lig... 94 8e-20
sp|Q89AG3|SYV_BUCBP Valyl-tRNA synthetase (Valine--tRNA lig... 94 1e-19
sp|P28350|SYV_NEUCR Valyl-tRNA synthetase, mitochondrial pr... 92 3e-19
sp|P47576|SYV_MYCGE Valyl-tRNA synthetase (Valine--tRNA lig... 90 2e-18
sp|Q9Z1Q9|SYV_MOUSE Valyl-tRNA synthetase (Valine--tRNA lig... 89 2e-18
sp|Q04462|SYV_RAT Valyl-tRNA synthetase (Valine--tRNA ligas... 89 2e-18
sp|P43834|SYV_HAEIN Valyl-tRNA synthetase (Valine--tRNA lig... 89 3e-18
>sp|Q9X2D7|SYV_THEMA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 865
Score = 96.7 bits (239), Expect = 2e-20
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
FSI++PPPN+TG +H+GHAL+ +LQD ++R K+M G+ +W+PG DHAGIATQ VEK L
Sbjct: 36 FSIVIPPPNITGRIHMGHALNITLQDIVVRYKRMKGYDVLWVPGEDHAGIATQNAVEKFL 95
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
+ GK + IG+ +F+ I W
Sbjct: 96 LQTQGK--TREEIGREKFLEITWEW 118
>sp|P96142|SYV_THETH Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
sp|Q5SJ45|SYV_THET8 Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 862
Score = 95.9 bits (237), Expect = 3e-20
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +3
Query: 33 FDPVFIDGACSELWSSXXXXXXXXXX---FSILLPPPNVTGNLHLGHALSFSLQDAIIRS 203
+DP ++ +E W+ F I +PPPNVTG+LH+GHAL SLQDA+IR
Sbjct: 7 YDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRY 66
Query: 204 KKMMGHRTIWIPGFDHAGIATQIQVEKLLQKEHGKLWNSQMIGKGEFVNICNNW 365
K+M G +W+PG DHAGIATQ+ VE+LL KE GK + +G+ +F+ W
Sbjct: 67 KRMRGFEAVWLPGTDHAGIATQVVVERLLLKE-GKTRHD--LGREKFLERVWQW 117
>sp|O67411|SYV_AQUAE Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 1165
Score = 95.5 bits (236), Expect = 3e-20
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
FS+++PPPNVTG+LH+GHAL+ +LQD I+R ++M G +W+PGFDHAGIATQ VEK L
Sbjct: 36 FSVVIPPPNVTGSLHMGHALNATLQDVIVRWQRMRGRECVWVPGFDHAGIATQYVVEKQL 95
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
KE GK + +G+ EF+ W
Sbjct: 96 AKE-GK--SRLELGREEFLKKVWEW 117
>sp|P93736|SYV_ARATH Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 1108
Score = 94.4 bits (233), Expect = 8e-20
Identities = 43/85 (50%), Positives = 60/85 (70%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
F I+LPPPNVTG LH+GHAL+ +++D IIR K+M G+ +W+PG DHAGIATQ+ VEK +
Sbjct: 170 FVIVLPPPNVTGALHIGHALTSAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKI 229
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
++ G + +G+ EFV W
Sbjct: 230 MRDRGMTRHD--VGREEFVKEVWKW 252
>sp|Q89AG3|SYV_BUCBP Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 956
Score = 93.6 bits (231), Expect = 1e-19
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Frame = +3
Query: 15 IEKYDKFDPVFIDGACSELWSSXXXXXXXXXX----FSILLPPPNVTGNLHLGHALSFSL 182
I+KY FDP+ ++ + E W F I++PPPN+TGNLH+GHA ++
Sbjct: 2 IKKY--FDPLRMEKSLYEFWEKNGYFKPQNNKGKPNFCIVMPPPNITGNLHIGHAFQQTI 59
Query: 183 QDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLLQKEHGKLWNSQMIGKGEFVNICNN 362
D +IR +M+G T W G DHAGIATQI VEK + KE K Q +GK EF+
Sbjct: 60 MDILIRYNRMIGKNTFWQVGTDHAGIATQIVVEKKILKEENK--TVQQLGKKEFLERIWK 117
Query: 363 W 365
W
Sbjct: 118 W 118
>sp|P28350|SYV_NEUCR Valyl-tRNA synthetase, mitochondrial precursor (Valine--tRNA
ligase) (ValRS)
Length = 1093
Score = 92.4 bits (228), Expect = 3e-19
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
F I LPPPNVTG LH GHAL+ SLQD +IR +M G+ T+W+PG DHAGI+TQ VEK+L
Sbjct: 172 FVIPLPPPNVTGALHCGHALANSLQDTLIRWYRMKGYETLWVPGCDHAGISTQSVVEKML 231
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
K+ K+ Q +G+ +F ++ W
Sbjct: 232 WKKEKKI--RQELGREKFTDLVWEW 254
>sp|P47576|SYV_MYCGE Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 837
Score = 89.7 bits (221), Expect = 2e-18
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
F+ +LPPPN+TG LH+GHA S+ D I+R KKM G WIPGFDHAGIATQ + EK+
Sbjct: 39 FTAILPPPNLTGTLHIGHAFEVSITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIA 98
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
KE+ K +++ K E + NW
Sbjct: 99 LKENQKYFDADDDKKSEMI---MNW 120
>sp|Q9Z1Q9|SYV_MOUSE Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) (G7a protein)
Length = 1263
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
F + +PPPNVTG+LHLGHAL+ ++QD++ R +M G T+W PG DHAGIATQ+ VEK L
Sbjct: 336 FMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 395
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
KE G N +G+ F+ W
Sbjct: 396 WKERG--LNRHQLGREAFLEEVWKW 418
>sp|Q04462|SYV_RAT Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 1264
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +3
Query: 111 FSILLPPPNVTGNLHLGHALSFSLQDAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLL 290
F + +PPPNVTG+LHLGHAL+ ++QD++ R +M G T+W PG DHAGIATQ+ VEK L
Sbjct: 337 FMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 396
Query: 291 QKEHGKLWNSQMIGKGEFVNICNNW 365
KE G N +G+ F+ W
Sbjct: 397 WKERG--LNRHQLGREAFLQEVWKW 419
>sp|P43834|SYV_HAEIN Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 954
Score = 89.0 bits (219), Expect = 3e-18
Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Frame = +3
Query: 18 EKYDKFDPVFIDGACSELWSSXXXXXXXXXX----FSILLPPPNVTGNLHLGHALSFSLQ 185
E D+F+P ++ A + W + I +PPPNVTG+LH+GHA +L
Sbjct: 6 EMADRFNPSAVEQALYQRWEESGYFKPSENENAPSYCIAIPPPNVTGSLHMGHAFQQTLM 65
Query: 186 DAIIRSKKMMGHRTIWIPGFDHAGIATQIQVEKLLQKEHGKLWNSQMIGKGEFVNICNNW 365
D +IR +M GH T+W G DHAGIATQ+ VE+ + E GK + G+ F+N +W
Sbjct: 66 DTLIRFNRMEGHNTLWQTGTDHAGIATQMVVERKIAAEEGKTRHD--YGREAFINKIWDW 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,655,604
Number of Sequences: 369166
Number of extensions: 802146
Number of successful extensions: 2459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)