Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_O15
(227 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45889|ACTZ_DROME Actin-like protein 87C 102 4e-22
sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centros... 100 1e-21
sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein... 100 2e-21
sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein... 99 4e-21
sp|P53489|ARP2_CAEEL Actin-like protein 2 (Actin-related pr... 71 7e-13
sp|P45891|ACTY_DROME Actin-like protein 53D 71 7e-13
sp|Q61JZ2|ARP2_CAEBR Actin-like protein 2 (Actin-related pr... 71 7e-13
sp|P51775|ACT_GIALA Actin 70 1e-12
sp|P11426|ACT_ENTHI Actin 70 1e-12
sp|Q9NJV4|ACT1_NAEGR Actin-1 68 6e-12
>sp|P45889|ACTZ_DROME Actin-like protein 87C
Length = 376
Score = 102 bits (253), Expect = 4e-22
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIG 180
EFEIVR +KEK C+L+ NP+ +E E + Y LPDG IG A+FRAPE+LFRPDL+G
Sbjct: 210 EFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLG 269
Query: 181 SECDGIHEVLAYSIQ 225
EC+GIH+VL YSI+
Sbjct: 270 EECEGIHDVLMYSIE 284
>sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61163|ACTZ_HUMAN Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61162|ACTZ_CANFA Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
Length = 376
Score = 100 bits (249), Expect = 1e-21
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIG 180
EFEIV+ +KE+AC+LS NP+ E E + Y LPDGS + IG ++FRAPELLFRPDLIG
Sbjct: 210 EFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIG 269
Query: 181 SECDGIHEVLAYSIQ 225
E +GIHEVL ++IQ
Sbjct: 270 EESEGIHEVLVFAIQ 284
>sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 99.8 bits (247), Expect = 2e-21
Identities = 44/74 (59%), Positives = 58/74 (78%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIG 180
EFE+VR +KE+AC+LS NP+ E E + Y LPDGS L +G A+FRAPELLF+PDL+G
Sbjct: 210 EFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVG 269
Query: 181 SECDGIHEVLAYSI 222
E +G+HEVLA++I
Sbjct: 270 DESEGLHEVLAFAI 283
>sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 98.6 bits (244), Expect = 4e-21
Identities = 43/74 (58%), Positives = 58/74 (78%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIG 180
EFE+VR +KE+AC+LS NP+ E E + Y LPDGS L +G A+FRAPELLF+PDL+G
Sbjct: 210 EFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVG 269
Query: 181 SECDGIHEVLAYSI 222
E +G+HEV+A++I
Sbjct: 270 DESEGLHEVVAFAI 283
>sp|P53489|ARP2_CAEEL Actin-like protein 2 (Actin-related protein 2) (Actin-like protein
C)
Length = 395
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTT----YPLPDGSKLRIGGAKFRAPELLFRP 168
+FE VRQ+KEK C+++ + E +E+ ++ T Y LPDG +R+GG +F APE+LF+P
Sbjct: 209 DFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGERFEAPEILFQP 268
Query: 169 DLIGSECDGIHEVLAYSIQ 225
LI E G+ E+L IQ
Sbjct: 269 HLINVEKAGLSELLFGCIQ 287
>sp|P45891|ACTY_DROME Actin-like protein 53D
Length = 376
Score = 71.2 bits (173), Expect = 7e-13
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSAN--PEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDL 174
E EIVR++KEK C++S N EM +++ TY LPDG K+ +G +FR PE LF+P L
Sbjct: 210 EREIVREIKEKLCYVSMNYAKEMDLHGKVE--TYELPDGQKIVLGCERFRCPEALFQPSL 267
Query: 175 IGSECDGIHEVLAYSI 222
+G E GIHE +SI
Sbjct: 268 LGQEVMGIHEATHHSI 283
>sp|Q61JZ2|ARP2_CAEBR Actin-like protein 2 (Actin-related protein 2)
Length = 393
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNTT----YPLPDGSKLRIGGAKFRAPELLFRP 168
+FE VRQ+KEK C+++ + E +E+ ++ T Y LPDG +R+GG +F APE+LF+P
Sbjct: 207 DFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGERFEAPEILFQP 266
Query: 169 DLIGSECDGIHEVLAYSIQ 225
LI E G+ E+L IQ
Sbjct: 267 HLINVEKAGLSELLFGCIQ 285
>sp|P51775|ACT_GIALA Actin
Length = 375
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSANPEMQEQSEIDNT----TYPLPDGSKLRIGGAKFRAPELLFRP 168
EFEIVR +KEK CF++ + E + +++ TY LPDG + + A+F+ PELLFRP
Sbjct: 205 EFEIVRDIKEKLCFVALDYESVLAASMESANYTKTYELPDGVVITVNQARFKTPELLFRP 264
Query: 169 DLIGSECDGIHEVLAYSIQ 225
+L S+ DGIH++ +IQ
Sbjct: 265 ELNNSDMDGIHQLCYKTIQ 283
>sp|P11426|ACT_ENTHI Actin
Length = 376
Score = 70.5 bits (171), Expect = 1e-12
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSA--NPEMQE---QSEIDNTTYPLPDGSKLRIGGAKFRAPELLFR 165
E EIVR +KEK C+++ N EMQ+ SE++ + Y LPDG + +G +FR PE LF+
Sbjct: 206 EREIVRDIKEKLCYVAEDFNEEMQKAASSSELEKS-YELPDGQVITVGNERFRCPEALFQ 264
Query: 166 PDLIGSECDGIHEVLAYSI 222
P +G EC+GIHE SI
Sbjct: 265 PSFLGMECNGIHETTYNSI 283
>sp|Q9NJV4|ACT1_NAEGR Actin-1
Length = 374
Score = 68.2 bits (165), Expect = 6e-12
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Frame = +1
Query: 1 EFEIVRQLKEKACFLSAN--PEMQEQSEID--NTTYPLPDGSKLRIGGAKFRAPELLFRP 168
E EIVR +KEK C+++ + EM++ SE +T+Y LPDG+ + IG +FR PE+LF+P
Sbjct: 204 EREIVRDIKEKLCYIAFDFEGEMKKASESTAVDTSYELPDGNIITIGNERFRCPEVLFQP 263
Query: 169 DLIGSECDGIHEVLAYSI 222
+ IG E G+HE SI
Sbjct: 264 NFIGMEAAGVHETAFNSI 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,027,599
Number of Sequences: 369166
Number of extensions: 566524
Number of successful extensions: 1780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1670828180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)