Planarian EST Database


Dr_sW_010_O13-2

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_010_O13-2
         (130 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CS42|PRPS2_MOUSE  Ribose-phosphate pyrophosphokinase II...    58   6e-09
sp|P21108|PRPS3_HUMAN  Ribose-phosphate pyrophosphokinase II...    57   1e-08
sp|P09330|PRPS2_RAT  Ribose-phosphate pyrophosphokinase II (...    57   1e-08
sp|Q4R4R7|PRPS2_MACFA  Ribose-phosphate pyrophosphokinase II...    57   2e-08
sp|P60891|PRPS1_HUMAN  Ribose-phosphate pyrophosphokinase I ...    56   2e-08
sp|Q9D7G0|PRPS1_MOUSE  Ribose-phosphate pyrophosphokinase I ...    56   2e-08
sp|P65235|KPRS_NEIMB  Ribose-phosphate pyrophosphokinase (RP...    36   0.031
sp|Q12265|KPR5_YEAST  Probable ribose-phosphate pyrophosphok...    36   0.031
sp|Q899I8|KPRS_CLOTE  Ribose-phosphate pyrophosphokinase (RP...    35   0.054
sp|P38689|KPR3_YEAST  Ribose-phosphate pyrophosphokinase 3 (...    35   0.070
>sp|Q9CS42|PRPS2_MOUSE Ribose-phosphate pyrophosphokinase II (Phosphoribosyl pyrophosphate
           synthetase II) (PRS-II)
          Length = 318

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI S+ F A+VVTNTI Q+  MK  +K+Q ID+SM
Sbjct: 252 IFSGPAISRINSAAFEAVVVTNTIPQEDKMKHCSKIQVIDISM 294
>sp|P21108|PRPS3_HUMAN Ribose-phosphate pyrophosphokinase III (Phosphoribosyl
           pyrophosphate synthetase III) (PRS-III) (Phosphoribosyl
           pyrophosphate synthetase 1-like 1)
          Length = 318

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 27/43 (62%), Positives = 35/43 (81%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI ++ F A+VVTNTI QD+ MK  +K++ ID+SM
Sbjct: 252 IFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISM 294
>sp|P09330|PRPS2_RAT Ribose-phosphate pyrophosphokinase II (Phosphoribosyl pyrophosphate
           synthetase II) (PRS-II)
          Length = 318

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI ++ F A+VVTNTI Q+  MK  +K+Q ID+SM
Sbjct: 252 IFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCSKIQVIDISM 294
>sp|Q4R4R7|PRPS2_MACFA Ribose-phosphate pyrophosphokinase II (Phosphoribosyl pyrophosphate
           synthetase II) (PRS-II)
 sp|P11908|PRPS2_HUMAN Ribose-phosphate pyrophosphokinase II (Phosphoribosyl pyrophosphate
           synthetase II) (PRS-II) (PPRibP)
          Length = 318

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI ++ F A+VVTNTI Q+  MK   K+Q ID+SM
Sbjct: 252 IFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCTKIQVIDISM 294
>sp|P60891|PRPS1_HUMAN Ribose-phosphate pyrophosphokinase I (Phosphoribosyl pyrophosphate
           synthetase I) (PRS-I) (PPRibP)
 sp|P60892|PRPS1_RAT Ribose-phosphate pyrophosphokinase I (Phosphoribosyl pyrophosphate
           synthetase I) (PRS-I)
          Length = 318

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI ++ F A+VVTNTI Q+  MK  +K+Q ID+SM
Sbjct: 252 IFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISM 294
>sp|Q9D7G0|PRPS1_MOUSE Ribose-phosphate pyrophosphokinase I (Phosphoribosyl pyrophosphate
           synthetase I) (PRS-I)
          Length = 318

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVSM 129
           IFSGPAISRI ++ F A+VVTNTI Q+  MK  +K+Q ID+SM
Sbjct: 252 IFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISM 294
>sp|P65235|KPRS_NEIMB Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl
           pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP
           synthetase)
 sp|P65234|KPRS_NEIMA Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl
           pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP
           synthetase)
          Length = 327

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVS 126
           +FSG A+SRI SS+   +VVT+TI   +  K  ++++ + ++
Sbjct: 254 VFSGEAVSRIASSEIDQVVVTDTIPLSEAAKNCDRIRQVTIA 295
>sp|Q12265|KPR5_YEAST Probable ribose-phosphate pyrophosphokinase 5 (Phosphoribosyl
           pyrophosphate synthetase 5)
          Length = 496

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQ--SNKVQCIDVS 126
           +FSG A+ RI  S    ++++NT+ QD+ ++    ++V  IDVS
Sbjct: 429 VFSGDALERIGQSSIDKLIISNTVPQDRTLQYLGKDRVDVIDVS 472
>sp|Q899I8|KPRS_CLOTE Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl
           pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP
           synthetase)
          Length = 320

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVS 126
           + SGPA+ RI++S    ++  NTID  K+ K S+K++ + V+
Sbjct: 259 VLSGPAMERIDNSVIKELITLNTIDISKI-KPSDKIKVLSVA 299
>sp|P38689|KPR3_YEAST Ribose-phosphate pyrophosphokinase 3 (Phosphoribosyl pyrophosphate
           synthetase 3)
          Length = 320

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 1   IFSGPAISRIESSKFTAIVVTNTIDQDKVMKQSNKVQCIDVS 126
           + SG AI  I +SK   +V TNT+  ++ +K+  K+  ID+S
Sbjct: 254 VLSGRAIENINNSKLDRVVCTNTVPFEEKIKKCPKLAVIDIS 295
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,085,985
Number of Sequences: 369166
Number of extensions: 91394
Number of successful extensions: 307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 68,354,980
effective HSP length: 16
effective length of database: 65,399,220
effective search space used: 1700379720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)