Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_O12
(737 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 332 5e-91
sp|P49154|RS2_URECA 40S ribosomal protein S2 321 1e-87
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 316 5e-86
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 314 1e-85
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 314 2e-85
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 312 7e-85
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 306 4e-83
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 305 8e-83
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 298 8e-81
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 288 8e-78
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 332 bits (852), Expect = 5e-91
Identities = 163/212 (76%), Positives = 182/212 (85%), Gaps = 1/212 (0%)
Frame = +3
Query: 42 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQ 218
++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQ
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96
Query: 219 KQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNK 398
KQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 399 LGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATL 578
+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T TL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216
Query: 579 ENFAKATYMAIRRTYEYLSPDLWNATPKHTKP 674
NFAKATY AI +TY YL+PDLW P + P
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 321 bits (822), Expect = 1e-87
Identities = 161/202 (79%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Frame = +3
Query: 54 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 230
KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44 KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
Query: 231 AGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 410
AGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163
Query: 411 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFA 590
HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQTATL NFA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223
Query: 591 KATYMAIRRTYEYLSPDLWNAT 656
KATY AI TY YL+PDLW T
Sbjct: 224 KATYAAIAATYSYLTPDLWRET 245
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 316 bits (809), Expect = 5e-86
Identities = 158/204 (77%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 224
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 225 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 404
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 405 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 584
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 585 FAKATYMAIRRTYEYLSPDLWNAT 656
FAKAT+ AI +TY YL+PDLW T
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKET 244
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 314 bits (805), Expect = 1e-85
Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 224
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 225 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 404
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 405 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 584
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 585 FAKATYMAIRRTYEYLSPDLWNAT 656
FAKAT+ AI +TY YL+PDLW T
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKET 259
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 314 bits (804), Expect = 2e-85
Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 224
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 225 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 404
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 405 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 584
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 585 FAKATYMAIRRTYEYLSPDLWNAT 656
FAKAT+ AI +TY YL+PDLW T
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKET 259
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 312 bits (799), Expect = 7e-85
Identities = 155/204 (75%), Positives = 173/204 (84%), Gaps = 1/204 (0%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 224
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 49 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108
Query: 225 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 404
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168
Query: 405 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 584
HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228
Query: 585 FAKATYMAIRRTYEYLSPDLWNAT 656
FAKAT+ AI +TY YL+PDLW T
Sbjct: 229 FAKATFDAISKTYSYLTPDLWKET 252
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 306 bits (784), Expect = 4e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +3
Query: 66 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 242
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 243 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 422
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 423 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 602
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 603 MAIRRTYEYLSPDLWNAT 656
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 305 bits (781), Expect = 8e-83
Identities = 153/211 (72%), Positives = 170/211 (80%)
Frame = +3
Query: 42 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQK 221
EK++ EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQK
Sbjct: 52 EKET-EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQK 110
Query: 222 QTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 401
QT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGNK+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 402 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLE 581
G HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TATL
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 582 NFAKATYMAIRRTYEYLSPDLWNATPKHTKP 674
NFAKATY A++RTY YL+PDLW P
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSP 261
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 298 bits (764), Expect = 8e-81
Identities = 139/210 (66%), Positives = 168/210 (80%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 227
+ KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89
Query: 228 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 407
RAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYWG LGD
Sbjct: 90 RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149
Query: 408 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 587
HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T TL NF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
Query: 588 AKATYMAIRRTYEYLSPDLWNATPKHTKPI 677
KA + A TY L+P+LW P PI
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPI 239
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 288 bits (738), Expect = 8e-78
Identities = 142/200 (71%), Positives = 164/200 (82%)
Frame = +3
Query: 48 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 227
++K W P TKLGRLV G V+ + EIY++S+PIKE +IID FL LKDEV+ I PVQKQT
Sbjct: 45 ETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFL-NLKDEVMKIVPVQKQT 103
Query: 228 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 407
RAGQRTRFKA V +GD+NGHVGLGVKCAKEVATAI GAI AKLSVIPVR+GYWGNKLG
Sbjct: 104 RAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGA 163
Query: 408 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 587
HTVP KVTGKCGSV+VRL+PAPRGTGIV A V KKLL AG+ DVYTS+ G+T T+ NF
Sbjct: 164 PHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNF 223
Query: 588 AKATYMAIRRTYEYLSPDLW 647
AT+ AI +T+ YL+PDLW
Sbjct: 224 VMATFFAITKTFAYLTPDLW 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,585,086
Number of Sequences: 369166
Number of extensions: 1636809
Number of successful extensions: 4510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4353
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)