Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_O10
(743 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 363 e-100
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 361 e-99
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 349 4e-96
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 349 4e-96
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 264 2e-70
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 241 1e-63
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 241 2e-63
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 240 3e-63
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 238 1e-62
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 201 2e-51
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 363 bits (933), Expect = e-100
Identities = 169/223 (75%), Positives = 202/223 (90%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLGSFEQMEA+H+++TPAELYNAVLVDTPLAP+F+DCISEQDL E +IEIIRNTLY+
Sbjct: 125 KCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYK 184
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+E FY+FCK +GG TA++MCEILAFEADRR+ IITINSF TELSK+DRA LYP+CG+L
Sbjct: 185 AYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPRCGKL 244
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFM 540
P+GL+ LARADDYEQVKAVA+YY+EY A+FEG G DK+LEDKFFEHEV +NV++F+
Sbjct: 245 NPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHEVNLNVHAFL 304
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
QQF+F VFYS +KLKEQE RNIVWI+ECV+Q+HRAKID+YI I
Sbjct: 305 QQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 347
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 361 bits (927), Expect = e-99
Identities = 168/223 (75%), Positives = 201/223 (90%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLGSFEQMEA+H++STPAELYNAVLVDTPLAP+F+DCISEQDL E +IEIIRNTLY+
Sbjct: 127 KCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYK 186
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+E FY FCK++GG TA++MCEILAFEADRR+ IITINSF TELSK+DRA LYP CG++
Sbjct: 187 AYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGKM 246
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFM 540
YP+GL+ LARADDYEQVK VA+YY+EY A+F+G G DK+LEDKFFEHEVK++V +F+
Sbjct: 247 YPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKLDVYAFL 306
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
QQF+F VFY+ +KLKEQE RNIVWIAECV+Q+HRAKID+YI I
Sbjct: 307 QQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPI 349
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 349 bits (896), Expect = 4e-96
Identities = 167/223 (74%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLGSFEQMEA++I+ TPAELYNA+LVDTPLA +F DCISEQDL E +IEIIRNTLY+
Sbjct: 128 KCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYK 187
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSKEDRA L+P CGRL
Sbjct: 188 AYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRL 247
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFM 540
YPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+FFEHEVK+N +F+
Sbjct: 248 YPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFL 307
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 308 NQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 349 bits (896), Expect = 4e-96
Identities = 167/223 (74%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLGSFEQMEA++I+ TPAELYNA+LVDTPLA +F DCISEQDL E +IEIIRNTLY+
Sbjct: 128 KCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYK 187
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSKEDRA L+P CGRL
Sbjct: 188 AYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRL 247
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFM 540
YPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+FFEHEVK+N +F+
Sbjct: 248 YPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFL 307
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 308 NQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 264 bits (675), Expect = 2e-70
Identities = 131/223 (58%), Positives = 162/223 (72%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLG F+ M L + A+LYN VL+DTPLAPY C+SE+DL E + EIIRNTLY+
Sbjct: 134 KCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNNEIIRNTLYK 193
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFD-TELSKEDRANLYPKCGR 360
AY+EDFY +CK LGG T IM +IL FEADRRS ITINSF TELSK+DR LYP G
Sbjct: 194 AYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGL 253
Query: 361 LYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFM 540
LYPEG S L +A+D +QV+ + + YS Y+ F G N+KSLED FFEHEV +N +F
Sbjct: 254 LYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEVHLNRMAFE 312
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
Q+ + VFY+ IKL+EQE+RNIVWIAEC+SQ + K++ YI I
Sbjct: 313 DQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPI 355
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 241 bits (616), Expect = 1e-63
Identities = 118/223 (52%), Positives = 157/223 (70%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
+CHPLG FE + AL +++ ELY+ VL++TPLAPYF DC+S DL E IEIIRNTLY+
Sbjct: 124 RCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRNTLYK 183
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+EDFY FCK +G TA+ M IL FEADRR+ ITINSF TELSKE+RA +YP GRL
Sbjct: 184 AYLEDFYNFCKKIGACTADTMLPILEFEADRRAITITINSFGTELSKEERAKMYPSFGRL 243
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQ 543
YP S+LARA++ V+ EY F+ + KSL+D F E EV++N +F+Q
Sbjct: 244 YPFSTSILARAENAGDVENACSLVKEYSDFFD---QNSQKSLDDHFNEKEVELNKLAFLQ 300
Query: 544 QFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINIL 672
QF++ + Y+ +KL+EQE+RN+ WIAEC+SQ R + + + IL
Sbjct: 301 QFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDRALNIVPIL 343
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 241 bits (614), Expect = 2e-63
Identities = 112/216 (51%), Positives = 158/216 (73%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLG F+ + L ++ ELY VLVDTPLAPYF +C++ +DL + +IEI+RNTLY+
Sbjct: 128 KCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYK 187
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+EDFY+FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++EDR LY G L
Sbjct: 188 AYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLL 247
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQ 543
YP G LA +D +QV+ V + Y Y+AIF + G + L+ F+E EV+ +F Q
Sbjct: 248 YPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQ 307
Query: 544 QFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKI 651
QF++AVF++ ++L+EQE+RN++WI+ECV+Q +++I
Sbjct: 308 QFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRI 343
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 240 bits (613), Expect = 3e-63
Identities = 112/216 (51%), Positives = 157/216 (72%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
KCHPLG F+ + L ++ ELY VLVDTPLAPYF +C++ +DL + +IEI+RNTLY+
Sbjct: 128 KCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYK 187
Query: 184 AYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRL 363
AY+EDFY FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++EDR LY G L
Sbjct: 188 AYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLL 247
Query: 364 YPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQ 543
YP G LA +D +QV+ V + Y Y+AIF + G + L+ F+E EV+ +F Q
Sbjct: 248 YPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQ 307
Query: 544 QFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKI 651
QF++AVF++ ++L+EQE+RN++WI+ECV+Q +++I
Sbjct: 308 QFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRI 343
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 238 bits (607), Expect = 1e-62
Identities = 116/240 (48%), Positives = 165/240 (68%), Gaps = 18/240 (7%)
Frame = +1
Query: 4 KCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYR 183
+CHPLG FE M L +++ ELYN+V+++TPLAPYF +S QDL E +IEI+RNTLY+
Sbjct: 124 RCHPLGWFETMPVLCVATNIEELYNSVMIETPLAPYFKSSLSLQDLDELNIEIVRNTLYK 183
Query: 184 AYIEDFYEFCKS----LGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPK 351
Y+EDFY F + G TAE+M E+L FEADRR+ IT+NSF TELSK DR LYP
Sbjct: 184 NYLEDFYHFVNTHPDMAGTPTAEVMSELLEFEADRRAINITLNSFGTELSKADRKKLYPN 243
Query: 352 CGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG--------------NDKSL 489
G+LYPEG ML+RADD+E V+ + ++YK+ F+ G G KSL
Sbjct: 244 FGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGPGNMGGGGTEGKSL 303
Query: 490 EDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
ED F++ E++++ +F +QF +A+ Y+ +KL+EQE+RNI WIAEC++Q + +I++YI++
Sbjct: 304 EDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINNYISV 363
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 201 bits (510), Expect = 2e-51
Identities = 92/223 (41%), Positives = 151/223 (67%), Gaps = 2/223 (0%)
Frame = +1
Query: 7 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 186
CHPLG F+Q+ A+ ++S AEL++AVL+DTP+A + + + L D+EI+R LYRA
Sbjct: 125 CHPLGEFDQLGAIEVASNSAELFDAVLIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRA 184
Query: 187 YIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRLY 366
Y+E FY +C LGG TA +M +L+FEADRR+ I +N+ +++ ++R ++P CG L
Sbjct: 185 YLEKFYAYCSQLGGNTANVMTNLLSFEADRRTITIAVNAIGSDIIPKERLKMFPTCGYLP 244
Query: 367 PEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDK--SLEDKFFEHEVKMNVNSFM 540
L+ ++ +D ++++ V + + Y +F+ + +D +LED+F E K NV +F+
Sbjct: 245 KIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMMEAKKNVQTFL 304
Query: 541 QQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 669
QQ++F +FYS IKLK+ E+RNIVWI+EC++QR +I+++I I
Sbjct: 305 QQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFIPI 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,787,955
Number of Sequences: 369166
Number of extensions: 1526252
Number of successful extensions: 4089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4069
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)