Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N16
(799 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 223 5e-58
sp|P30436|TBA_ONCKE Tubulin alpha chain 222 8e-58
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 222 1e-57
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 221 1e-57
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 221 2e-57
sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6) 221 2e-57
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 220 3e-57
sp|Q91060|TBA_NOTVI Tubulin alpha chain 220 3e-57
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 220 4e-57
sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8) 219 5e-57
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 223 bits (568), Expect = 5e-58
Identities = 97/176 (55%), Positives = 135/176 (76%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS EIT + F+ +QMV + GKYMACC+ YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 TIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASKE 529
KFD++++KR+FVHWYVGEGMEEGEF+EA++++ +L +DYEE+ D G + E ++E
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEE 449
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 222 bits (566), Expect = 8e-58
Identities = 98/176 (55%), Positives = 133/176 (75%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS +IT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 268 PVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIA 327
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 328 AIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 387
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASKE 529
KFD++++KR+FVHWYVGEGMEEGEF+EA+++M +L +DYEE+ D G + E +E
Sbjct: 388 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDSVGEEDEEGEE 443
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 222 bits (565), Expect = 1e-57
Identities = 100/177 (56%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG++LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 NIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEG-GNDIEASKE 529
KFD++++KR+FVHWYVGEGMEEGEF EA++++ +L +DYEE+ D G DIE E
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGMDSADGEDIEGGDE 450
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 221 bits (564), Expect = 1e-57
Identities = 97/176 (55%), Positives = 134/176 (76%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS EIT + F+ +QMV GKYMACC+ YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 TIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASKE 529
KFD++++KR+FVHWYVGEGMEEGEF+EA++++ +L +DYEE+ D G + E ++E
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEE 449
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 221 bits (563), Expect = 2e-57
Identities = 98/175 (56%), Positives = 132/175 (75%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQL+ EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 TIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASK 526
KFD++++KR+FVHWYVGEGMEEGEF+EA+++M +L +DYEE+ AD D E +
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDDEGEE 448
>sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 221 bits (563), Expect = 2e-57
Identities = 98/175 (56%), Positives = 132/175 (75%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQL+ EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 TIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASK 526
KFD++++KR+FVHWYVGEGMEEGEF+EA+++M +L +DYEE+ AD D E +
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDDEGEE 448
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 220 bits (561), Expect = 3e-57
Identities = 98/175 (56%), Positives = 132/175 (75%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQL+ EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTAV++ WA +
Sbjct: 334 TIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASK 526
KFD++++KR+FVHWYVGEGMEEGEF+EA+++M +L +DYEE+ AD + E +
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEE 448
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 220 bits (561), Expect = 3e-57
Identities = 100/172 (58%), Positives = 132/172 (76%), Gaps = 2/172 (1%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPTAVPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 AIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAAD--EGGND 511
KFD++++KR+FVHWYVGEGMEEGEF+EA+++M +L +DYEE+ D EG D
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGLDSYEGEED 445
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 220 bits (560), Expect = 4e-57
Identities = 99/176 (56%), Positives = 132/176 (75%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
P++S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+
Sbjct: 274 PVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPTAVPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 TIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAADEGGNDIEASKE 529
KFD++++KR+FVHWYVGEGMEEGEF EA++++ +L +DYEE+ D D E +E
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGVDSA--DAEGEEE 447
>sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 219 bits (559), Expect = 5e-57
Identities = 98/165 (59%), Positives = 129/165 (78%)
Frame = +2
Query: 2 PIVSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVF 181
PIVS +A HEQLS EIT S F+ +SQMV GKYMACC+ YRG+V PKDVN A+
Sbjct: 274 PIVSAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIA 333
Query: 182 EIKRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGR 361
IK + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA +
Sbjct: 334 AIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 393
Query: 362 KFDVLFSKRSFVHWYVGEGMEEGEFNEAKDEMTSLVQDYEEIAAD 496
KFD++++KR+FVHWYVGEGMEEGEF+EA++++ +L +DYEE+ D
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTD 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,099,073
Number of Sequences: 369166
Number of extensions: 1152602
Number of successful extensions: 4196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3948
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)