Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N10
(218 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VQ62|NPC2_DROME Hypothetical protein NPC2 precursor (N... 48 6e-06
sp|Q9DGJ3|NPC2_BRARE Epididymal secretory protein E1 precur... 39 0.004
sp|P61917|NPC2_PANTR Epididymal secretory protein E1 precur... 37 0.011
sp|Q9Z0J0|NPC2_MOUSE Epididymal secretory protein E1 precur... 37 0.011
sp|Q25481|ES16_MANSE Ecdysteroid regulated 16 kDa protein p... 37 0.014
sp|P79345|NPC2_BOVIN Epididymal secretory protein E1 precur... 36 0.024
sp|O97763|NPC2_PIG Epididymal secretory protein E1 precurso... 35 0.069
sp|Q28895|NPC2_CANFA Epididymal secretory protein E1 precur... 32 0.34
sp|P27236|DCP_SALTY Peptidyl-dipeptidase dcp (Dipeptidyl ca... 29 2.9
sp|Q6BHL8|IPK1_DEBHA Inositol-pentakisphosphate 2-kinase (I... 28 6.5
>sp|Q9VQ62|NPC2_DROME Hypothetical protein NPC2 precursor (Niemann Pick type C2 protein
homolog)
Length = 148
Score = 48.1 bits (113), Expect = 6e-06
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 25 YTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSI 141
YT ++ +L+ YP V V + WEL D DG DI+CV++P I
Sbjct: 109 YTATLPVLRSYPKVSVLVKWELQDQDGADIICVEIPAKI 147
>sp|Q9DGJ3|NPC2_BRARE Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (16.5 kDa secretory protein)
Length = 149
Score = 38.9 bits (89), Expect = 0.004
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 25 YTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSIVS 147
Y + + YP+++V + WEL D D+ C++ P IV+
Sbjct: 109 YVTELPVKTEYPAIKVVVEWELRDDSSKDLFCIKFPVQIVN 149
>sp|P61917|NPC2_PANTR Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (EPI-1)
sp|P61918|NPC2_MACFA Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (Epididymal secretory protein 14.6)
(ESP14.6)
sp|P61916|NPC2_HUMAN Epididymal secretory protein E1 precursor (Niemann-Pick disease
type C2 protein) (hE1)
Length = 151
Score = 37.4 bits (85), Expect = 0.011
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 22 TYTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSIVS 147
+Y N + + YPS+++ + W+L D + C ++P IVS
Sbjct: 108 SYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFCWEIPVQIVS 149
>sp|Q9Z0J0|NPC2_MOUSE Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (mE1)
Length = 149
Score = 37.4 bits (85), Expect = 0.011
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 22 TYTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSIVS 147
+Y N + + YPS+++ + W+L D N++ C ++P I S
Sbjct: 108 SYLNKLPVKNEYPSIKLVVEWKLEDDKKNNLFCWEIPVQITS 149
>sp|Q25481|ES16_MANSE Ecdysteroid regulated 16 kDa protein precursor
Length = 145
Score = 37.0 bits (84), Expect = 0.014
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 19 STYTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSI 141
+ Y ++ +LK YP V V + WEL D D+VC+ +P I
Sbjct: 105 ANYKTTLPVLKSYPKVSVDVKWEL-KKDEEDLVCILIPARI 144
>sp|P79345|NPC2_BOVIN Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (EPV20)
Length = 149
Score = 36.2 bits (82), Expect = 0.024
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 25 YTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSI 141
Y N + + YPS++V + WEL D C Q+P +
Sbjct: 109 YVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEV 147
>sp|O97763|NPC2_PIG Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (16 kDa secretory protein)
Length = 149
Score = 34.7 bits (78), Expect = 0.069
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 22 TYTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSIVS 147
+Y N + + YPS+++ + W+L D + + C Q+P I S
Sbjct: 108 SYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLFCWQIPVQIES 149
>sp|Q28895|NPC2_CANFA Epididymal secretory protein E1 precursor (Niemann Pick type C2
protein homolog) (cE1)
Length = 149
Score = 32.3 bits (72), Expect = 0.34
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 22 TYTNSIDILKYYPSVRVTITWELIDADGNDIVCVQMPTSI 141
+Y N + + YPS+++ + W L+ + + C ++P I
Sbjct: 108 SYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLFCWEIPVQI 147
>sp|P27236|DCP_SALTY Peptidyl-dipeptidase dcp (Dipeptidyl carboxypeptidase)
Length = 680
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 22 TYTNSIDILKYYPSVRVTITWELIDADG 105
T+ DI Y+P VRV WE+ D+DG
Sbjct: 380 TFVERFDIPVYHPDVRV---WEIFDSDG 404
>sp|Q6BHL8|IPK1_DEBHA Inositol-pentakisphosphate 2-kinase
(Inositol-1,3,4,5,6-pentakisphosphate 2-kinase)
(Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase)
Length = 377
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 186 IKLFILYNKFQRLTNNRSRHLNANNIITI-SVNKFPCYC 73
+ LFI + K+ + N + H N NN+I I KF C
Sbjct: 290 VGLFIKFEKYNKYNNIHNSHNNINNLINIEGYGKFLLTC 328
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,141,990
Number of Sequences: 369166
Number of extensions: 294337
Number of successful extensions: 550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)