Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N09
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BM96|GP128_MOUSE Probable G-protein coupled receptor 1... 38 0.028
sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor ... 37 0.081
sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor ... 34 0.40
sp|Q8T5T1|MDN1_GIALA Midasin (MIDAS-containing protein) 33 0.90
sp|Q12124|MED2_YEAST RNA polymerase II mediator complex sub... 33 1.2
sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2 (PI3-... 32 2.6
sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromo... 32 2.6
sp|Q09604|VAB15_CAEEL Homeobox protein vab-15 31 3.4
sp|P14164|BAF1_YEAST Transcription factor BAF1 (ARS-binding... 31 4.5
sp|P07248|ADR1_YEAST Regulatory protein ADR1 31 4.5
>sp|Q8BM96|GP128_MOUSE Probable G-protein coupled receptor 128 precursor
Length = 785
Score = 38.1 bits (87), Expect = 0.028
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Frame = +3
Query: 279 IEQLNRQMYRKGGRGV-NWGLLTSMGTNNFVLGPSTVQGQLSGNGNSIVSRGIISNVTSN 455
I+Q+ Y +G + V + T + GPS + G+ NS+VS I+ N T+N
Sbjct: 234 IKQMENYSYSQGDQTVVEPNIAIQSVTRDDNSGPSVLFSVQKGSSNSLVSGRILINKTAN 293
Query: 456 GASYNNRLPIEA---SGDSPEICGLQILSNDSESSELHENLDFNLKVDYKMELDDNKNNR 626
G + + + ++ +G++ + CG + N +L ++ F D+ ++ +K N
Sbjct: 294 GFNPDGQTELQILLNTGENRKSCGFMVYQN----HKLFQSKTFTATSDFSQKIISSKINE 349
Query: 627 T 629
+
Sbjct: 350 S 350
>sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 36.6 bits (83), Expect = 0.081
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Frame = +3
Query: 300 MYRKGGRGVNWGLLTSMGTNNFVLGPSTVQGQ-------LSGNGNSIVSRG--IISNVTS 452
MY KG RG S+ T N L S +G SGN ++IV + NV
Sbjct: 1134 MYLKGPRG-------SVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVV 1186
Query: 453 NGASYNNRLPIEASGDSPEICGLQI--LSNDSESSELHENLDFNLKVDYKMELDDNKNNR 626
Y +G + L+I + N S+ + D + KM L DN N
Sbjct: 1187 KNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGND 1246
Query: 627 TSNSGITEKHHSPELVKNDWINQE 698
G + ++ +LV ++W N++
Sbjct: 1247 IGFIGFHQFNNIAKLVASNWYNRQ 1270
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 34.3 bits (77), Expect = 0.40
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Frame = +3
Query: 300 MYRKGGRGVNWGLLTSMGTNNFVLGPSTVQGQ-------LSGNGNSIVSRG--IISNVTS 452
MY KG RG S+ T N L + +G SGN ++IV + NV
Sbjct: 1134 MYLKGPRG-------SVVTTNIYLNSTLYEGTKFIIKKYASGNEDNIVRNNDRVYINVVV 1186
Query: 453 NGASYNNRLPIEASGDSPEICGLQI--LSNDSESSELHENLDFNLKVDYKMELDDNKNNR 626
Y +G + L+I + N S+ + D ++ KM L DN N
Sbjct: 1187 KNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKDDQGIRNKCKMNLQDNNGND 1246
Query: 627 TSNSGITEKHHSPELVKNDWINQE 698
G + +LV ++W N++
Sbjct: 1247 IGFIGFHLYDNIAKLVASNWYNRQ 1270
>sp|Q8T5T1|MDN1_GIALA Midasin (MIDAS-containing protein)
Length = 4835
Score = 33.1 bits (74), Expect = 0.90
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 519 LQILSNDSESSELHENLDFNLKVDYKMELDDNKNNRTSNSGITEKHH 659
L I +SE E E D L+ + +E DD+K+ R G+TE H
Sbjct: 4403 LNIHDRESEKDEAAEPQDMPLQSNKTVEFDDSKSGRDGALGLTESKH 4449
>sp|Q12124|MED2_YEAST RNA polymerase II mediator complex subunit 2
Length = 431
Score = 32.7 bits (73), Expect = 1.2
Identities = 27/97 (27%), Positives = 40/97 (41%)
Frame = +3
Query: 351 GTNNFVLGPSTVQGQLSGNGNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGLQIL 530
G N + S+++ ++ N NS T NG NN +GD +
Sbjct: 267 GNNYNDINISSIENNINNNINS----------TKNGKDNNNESNKNNNGDEKNKNNNEDN 316
Query: 531 SNDSESSELHENLDFNLKVDYKMELDDNKNNRTSNSG 641
N++ SSE + N + N DDN NN +NSG
Sbjct: 317 ENNNNSSEKNNNNNNN----NNNNNDDNGNNNNNNSG 349
>sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2 (PI3-kinase) (PtdIns-3-kinase) (PI3K)
Length = 1858
Score = 31.6 bits (70), Expect = 2.6
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Frame = +3
Query: 399 SGNGNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGLQILSNDSESS--------- 551
+ N NS +SRG I + NG+ N + P + G+Q S + S
Sbjct: 1051 NNNSNSNISRGSIDS-EGNGSGSGN------GSEQPTLIGVQNFSLPNNSKLPINIVKRL 1103
Query: 552 -----ELHENLDFNLKVDYKMELDDNKNNRTSNSGITEKHHSPELVKN 680
NL+FN D + + D KNN+ + + E ++ EL+ N
Sbjct: 1104 FRVNIAGLRNLNFNNNEDARNKFADGKNNQPNVFVMAELYYGGELLTN 1151
>sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III
Length = 1010
Score = 31.6 bits (70), Expect = 2.6
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Frame = +3
Query: 435 ISNVTSNGASYNNRLPIE------ASGDSPEICGLQILSN----DSESSELHENLDFNLK 584
I V + A+ N +P++ A G E + +N + ++S+L EN N
Sbjct: 183 IPKVPKHNATMNRTIPMDLDESKAAGGQCDETMNVFNFTNLEAAEMDTSKLDENNTMNA- 241
Query: 585 VDYKMELDDNKNNRTSNSGITEKHHSPELVKNDWINQEHISDLKSPQ 725
+ + N N + ITE H E KND + D+ +PQ
Sbjct: 242 ----IRIPINSNVMPVDMDITEHHTLIEEKKNDTFGPSQLMDISAPQ 284
>sp|Q09604|VAB15_CAEEL Homeobox protein vab-15
Length = 225
Score = 31.2 bits (69), Expect = 3.4
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Frame = +3
Query: 459 ASYNNRLPIEASGDSPEIC---------GLQILSNDSESSELHENLDFNLKVDYKMELDD 611
A NRLPI +S SPE C LQ LS+ E S ++ + + K L
Sbjct: 67 AQTGNRLPIVSSDSSPESCASSPLSMQHSLQWLSSQREDSPTSDDAKIQIGLS-KCMLRK 125
Query: 612 NKNNR 626
+KNNR
Sbjct: 126 HKNNR 130
>sp|P14164|BAF1_YEAST Transcription factor BAF1 (ARS-binding factor 1) (Protein ABF1)
(Bidirectionally acting factor) (SFB-B) (DNA replication
enhancer-binding protein OBF1)
Length = 731
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +3
Query: 435 ISNVTSNGASYNNRLPIEASGDSPEICGLQILSND-SESSELHENLDFNLK---VDYKME 602
+S++T + +++LP E + L++LS+ E LH+N D ++ VD +E
Sbjct: 629 LSDITLEERNEDDKLPHEVAEQ------LRLLSSHLKEVENLHQNNDDDVDDVMVDVDVE 682
Query: 603 LDDNKNNRTSNSGITEKHHSPE 668
NKN N+ ++ HH E
Sbjct: 683 SQYNKNTNHHNNHHSQPHHDEE 704
>sp|P07248|ADR1_YEAST Regulatory protein ADR1
Length = 1323
Score = 30.8 bits (68), Expect = 4.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 522 QILSNDSESSELHENLDFNLKVDYKMELDDNKN---NRTSNSGIT 647
+++ D ++ EL + D N+ +D + LD N N NR+ +SG T
Sbjct: 261 ELVPLDLKNPELDSSFDLNMNLDLNLNLDSNFNIALNRSDSSGST 305
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,173,411
Number of Sequences: 369166
Number of extensions: 1457053
Number of successful extensions: 3950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)