Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M18
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding ... 61 1e-09
sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding ... 60 2e-09
sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding ... 54 2e-07
sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding ... 54 2e-07
sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 (TDP-43) 44 1e-04
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 39 0.008
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 39 0.008
sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in ... 39 0.008
sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotei... 37 0.030
sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2... 37 0.030
>sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 466
Score = 61.2 bits (147), Expect = 1e-09
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 EDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAH 191
+ ELKDFF + YG V ++RI N G LPNFGF+VF + E V+++L N+PI +
Sbjct: 353 KSELKDFF-QSYGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGE 405
Query: 192 -RLNVEQKMGSSRGSHKAGRR*N 257
RLNVE+K +R + + RR N
Sbjct: 406 VRLNVEEK--KTRAAREGDRRDN 426
>sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 465
Score = 60.5 bits (145), Expect = 2e-09
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 EDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY-SA 188
+ ELKDFF + +G V ++RI N G LPNFGF+VF + E V+++L N+PI + A
Sbjct: 351 KSELKDFF-QNFGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGA 403
Query: 189 HRLNVEQKMGSSRGSHKAGRR*N 257
RLNVE+K +R + + RR N
Sbjct: 404 VRLNVEEK--KTRAAREGDRRDN 424
>sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 53.9 bits (128), Expect = 2e-07
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 NMTEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 182
++ E+ELK+FF +G V ++RI T G LPNFGF+VF + E V+ IL KPI +
Sbjct: 341 DIDENELKEFFMS-FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMF 396
Query: 183 SAH-RLNVEQK 212
RLNVE+K
Sbjct: 397 RGEVRLNVEEK 407
>sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 53.9 bits (128), Expect = 2e-07
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 NMTEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 182
++ E+ELK+FF +G V ++RI T G LPNFGF+VF + E V+ IL KPI +
Sbjct: 341 DIDENELKEFFMS-FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMF 396
Query: 183 SAH-RLNVEQK 212
RLNVE+K
Sbjct: 397 RGEVRLNVEEK 407
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 (TDP-43)
Length = 414
Score = 44.3 bits (103), Expect = 1e-04
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 NMTEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIY- 179
+MTEDEL++FFS+ YG V DV I KP F F+ F + ++ + + I
Sbjct: 201 DMTEDELREFFSQ-YGDVMDVFIP--------KPFRAFAFVTFADDQIAQSLCGEDLIIK 251
Query: 180 -YSAHRLNVEQKMGSSRGSHKAGR 248
S H N E K S+R ++GR
Sbjct: 252 GISVHISNAEPKHNSNRQLERSGR 275
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +3
Query: 9 TEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSA 188
T++ L+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++
Sbjct: 22 TQETLRSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTL 75
Query: 189 HRLNVEQKMGSSRG 230
N++ K + RG
Sbjct: 76 DGRNIDPKPCTPRG 89
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +3
Query: 9 TEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSA 188
T++ L+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++
Sbjct: 22 TQETLRSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTL 75
Query: 189 HRLNVEQKMGSSRG 230
N++ K + RG
Sbjct: 76 DGRNIDPKPCTPRG 89
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1) (Proline-rich Vg1 mRNA-binding protein)
Length = 360
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +3
Query: 9 TEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSA 188
T++ L+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++
Sbjct: 22 TQETLRSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTL 75
Query: 189 HRLNVEQKMGSSRG 230
N++ K + RG
Sbjct: 76 DGRNIDPKPCTPRG 89
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 (hnRNP A3(A))
Length = 373
Score = 36.6 bits (83), Expect = 0.030
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = +3
Query: 12 EDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAH 191
E L+D+ SE YG ++ + + + R S + + F F+ F +H+ V++I+ K Y++ +
Sbjct: 131 EYHLRDY-SESYGKIETIEVMEDRQSGKKR---GFAFVTFDDHDTVDKIVVQK--YHTIN 184
Query: 192 RLNVEQKMGSSR 227
N E K S+
Sbjct: 185 GHNCEVKKALSK 196
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 346
Score = 36.6 bits (83), Expect = 0.030
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 3 NMTEDELKDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 158
N +++K +F E++G V+D + +T+N + FGF+ F N +VVE++
Sbjct: 120 NTVVEDVKQYF-EQFGKVEDAMLMFDKTTNRHR---GFGFVTFENEDVVEKV 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,229,450
Number of Sequences: 369166
Number of extensions: 970733
Number of successful extensions: 2065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2064
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)