Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M09
(488 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 224 1e-58
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 224 1e-58
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 223 2e-58
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 222 3e-58
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 222 3e-58
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 220 2e-57
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 219 3e-57
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 218 5e-57
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 218 8e-57
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 217 1e-56
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 224 bits (570), Expect = 1e-58
Identities = 104/132 (78%), Positives = 118/132 (89%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTA
Sbjct: 307 NVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAV
Sbjct: 367 HIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 224 bits (570), Expect = 1e-58
Identities = 102/132 (77%), Positives = 122/132 (92%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTA
Sbjct: 305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTA 364
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAV
Sbjct: 365 HIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAV 424
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 425 RDMRQTVAVGVI 436
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 223 bits (567), Expect = 2e-58
Identities = 103/132 (78%), Positives = 118/132 (89%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTA
Sbjct: 307 NVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAV
Sbjct: 367 HIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 222 bits (566), Expect = 3e-58
Identities = 101/132 (76%), Positives = 122/132 (92%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTA
Sbjct: 305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTA 364
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAV
Sbjct: 365 HIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAV 424
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 425 RDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 222 bits (566), Expect = 3e-58
Identities = 101/132 (76%), Positives = 122/132 (92%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTA
Sbjct: 305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTA 364
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAV
Sbjct: 365 HIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAV 424
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 425 RDMRQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 220 bits (560), Expect = 2e-57
Identities = 100/132 (75%), Positives = 120/132 (90%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTA
Sbjct: 307 NVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAV
Sbjct: 367 HIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 219 bits (558), Expect = 3e-57
Identities = 103/132 (78%), Positives = 116/132 (87%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTA
Sbjct: 307 NVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAV
Sbjct: 367 HIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 218 bits (556), Expect = 5e-57
Identities = 102/132 (77%), Positives = 121/132 (91%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRGNV SDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTA
Sbjct: 305 NVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTA 364
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL++KIDRR+GK LE PK KSGDA +V+LVPSKPMCVE+++EYPPLGRFAV
Sbjct: 365 HIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAV 424
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVG+I
Sbjct: 425 RDMRQTVAVGII 436
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 218 bits (554), Expect = 8e-57
Identities = 102/132 (77%), Positives = 116/132 (87%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTA
Sbjct: 307 NVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAV
Sbjct: 367 HIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 217 bits (552), Expect = 1e-56
Identities = 100/132 (75%), Positives = 119/132 (90%)
Frame = +3
Query: 3 NVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTA 182
NVGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTA
Sbjct: 307 NVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTA 366
Query: 183 HIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAV 362
HIACKF EL +K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAV
Sbjct: 367 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAV 426
Query: 363 RDMKQTVAVGVI 398
RDM+QTVAVGVI
Sbjct: 427 RDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,693,604
Number of Sequences: 369166
Number of extensions: 1036292
Number of successful extensions: 2877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)