Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M06
(513 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 180 2e-45
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 179 3e-45
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 177 2e-44
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 176 2e-44
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 176 3e-44
sp|Q27652|G3P_ECHMU Glyceraldehyde-3-phosphate dehydrogenas... 176 3e-44
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 176 4e-44
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 175 6e-44
sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogena... 174 8e-44
sp|Q9C136|G3P1_RHIRA Glyceraldehyde-3-phosphate dehydrogena... 174 1e-43
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 180 bits (456), Expect = 2e-45
Identities = 89/135 (65%), Positives = 101/135 (74%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
A QNIIP IP LNGK+TGMAFRVP PDVSVVDLTC+L K A Y+EIKAA
Sbjct: 203 AMQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTCRLGKGASYEEIKAA 262
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K A+ +KGIL YTE+EVVS DF G +SSIFDAKAGI L + FVKLV+WYDNE+GYS
Sbjct: 263 VKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYS 322
Query: 363 CRVIDLIQHMSTKDH 407
CRV+DLI HM DH
Sbjct: 323 CRVVDLITHMHKVDH 337
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 179 bits (455), Expect = 3e-45
Identities = 90/134 (67%), Positives = 105/134 (78%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
A QNIIP IPELNGKITGMAFRVP P+VSVVDLTC+L+K AKYD+IKAA
Sbjct: 200 AGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKAA 259
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
IK ASE MKGIL YT+++VVS DF GD +SSIFDA AGI L + FVKLV+WYDNE GYS
Sbjct: 260 IKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYS 319
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 320 NRVVDLVCHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 177 bits (448), Expect = 2e-44
Identities = 87/134 (64%), Positives = 105/134 (78%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK
Sbjct: 200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRV 259
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K A++ +KGILAYTE++VVS DF GD +SS FDA AGI L D FVKLV+WYDNEYGYS
Sbjct: 260 VKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYS 319
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 320 NRVVDLMVHMASKE 333
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 176 bits (447), Expect = 2e-44
Identities = 85/134 (63%), Positives = 106/134 (79%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQN+IP IPEL+GK+TGMAFRVP +VSV+DLTC+L+K AKYD+IK
Sbjct: 201 AAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKV 260
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K ASE +KGIL YTE+EVVS DF G ++SSIFDA AGI+L DTFVKLV+WYDNE+GYS
Sbjct: 261 VKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYS 320
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 321 ERVVDLMAHMASKE 334
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 176 bits (446), Expect = 3e-44
Identities = 86/134 (64%), Positives = 104/134 (77%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+IK
Sbjct: 200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKV 259
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FVKL++WYDNE+GYS
Sbjct: 260 VKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 320 NRVVDLMAHMASKE 333
>sp|Q27652|G3P_ECHMU Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 336
Score = 176 bits (446), Expect = 3e-44
Identities = 88/136 (64%), Positives = 104/136 (76%), Gaps = 1/136 (0%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQNI+P IPELNGK+TGMAFRVP P+VSVVDLTCKL K A YD+IKAA
Sbjct: 201 AAQNIVPASTGAAKRVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCKLSKPATYDQIKAA 260
Query: 183 IKHASETT-MKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGY 359
+K ASE++ +K IL YTE++VVS DF SS FDA+AGI L DTFVKL+AWYDNE+GY
Sbjct: 261 VKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGY 320
Query: 360 SCRVIDLIQHMSTKDH 407
SCRV+DLI +M +DH
Sbjct: 321 SCRVVDLISYMFKRDH 336
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 176 bits (445), Expect = 4e-44
Identities = 86/134 (64%), Positives = 104/134 (77%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK
Sbjct: 200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRV 259
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K A+E +KGIL YTE++VVS DF GD +SS FDA AGI L D FVKLV+WYDNE+GYS
Sbjct: 260 VKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYS 319
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 320 NRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 175 bits (443), Expect = 6e-44
Identities = 86/134 (64%), Positives = 103/134 (76%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYDEIK
Sbjct: 189 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEIKKV 248
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
+K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FVKL++WYDNE+GYS
Sbjct: 249 VKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 308
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ HM++K+
Sbjct: 309 NRVVDLMVHMASKE 322
>sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 336
Score = 174 bits (442), Expect = 8e-44
Identities = 88/132 (66%), Positives = 103/132 (78%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
A+ NIIP +P LNGK+TGMAFRVP DVSVVDLT +L+KAA YDEIKAA
Sbjct: 203 ASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAA 262
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
IKH SET++KGIL YTE++VVS DF GD SSIFDAKAGI L FVK+V+WYDNE+GYS
Sbjct: 263 IKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYS 322
Query: 363 CRVIDLIQHMST 398
RVIDLI+HM++
Sbjct: 323 NRVIDLIRHMAS 334
>sp|Q9C136|G3P1_RHIRA Glyceraldehyde-3-phosphate dehydrogenase 1 (GAPDH 1)
Length = 337
Score = 174 bits (441), Expect = 1e-43
Identities = 89/134 (66%), Positives = 98/134 (73%)
Frame = +3
Query: 3 AAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAA 182
AA NIIP IP LNGK+TGMAFRVP PDVSVVDLT L K A YDEIK A
Sbjct: 201 AAANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVNLSKGASYDEIKQA 260
Query: 183 IKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYS 362
IK ASETTMKG+L YT + VVS DF G+ SS+FDA AGIQLT TFVKL+AWYDNEYGYS
Sbjct: 261 IKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYS 320
Query: 363 CRVIDLIQHMSTKD 404
RV+DL+ H + D
Sbjct: 321 NRVVDLLVHAAKVD 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,832,761
Number of Sequences: 369166
Number of extensions: 955485
Number of successful extensions: 2722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2651
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)