Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M01
(782 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein... 284 2e-76
sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein... 283 5e-76
sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centros... 278 2e-74
sp|P45889|ACTZ_DROME Actin-like protein 87C 271 1e-72
sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like pr... 210 3e-54
sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin) 195 1e-49
sp|Q8SWN8|ACT_ENCCU Actin 191 3e-48
sp|P27131|ACT1_NAEFO Actin-1 (Actin I) 187 2e-47
sp|P02578|ACT1_ACACA Actin-1 187 3e-47
sp|P53496|ACT11_ARATH Actin-11 187 3e-47
>sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 284 bits (726), Expect = 2e-76
Identities = 135/185 (72%), Positives = 161/185 (87%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKL 182
VSRYLRLLLRKEG F TSAEFE+VR +KE+AC+LS NP+ E E + Y LPDGS L
Sbjct: 190 VSRYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTL 249
Query: 183 RIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKG 362
+G A+FRAPELLF+PDL+G E +G+HEVLA++I KSDMDLR+ L+ NIVLSGGSTLFKG
Sbjct: 250 DVGPARFRAPELLFQPDLVGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLFKG 309
Query: 363 FGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGYR 542
FGDR+LSE+KKLAPKD KI+ISAPQERLYSTWIGGSILASLDTF++MW+SK+E+E+DG R
Sbjct: 310 FGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSR 369
Query: 543 ALHRK 557
A+HRK
Sbjct: 370 AIHRK 374
>sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 283 bits (723), Expect = 5e-76
Identities = 134/185 (72%), Positives = 161/185 (87%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKL 182
VSRYLRLLLRKEG F TSAEFE+VR +KE+AC+LS NP+ E E + Y LPDGS L
Sbjct: 190 VSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTL 249
Query: 183 RIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKG 362
+G A+FRAPELLF+PDL+G E +G+HEV+A++I KSDMDLR+ L+ NIVLSGGSTLFKG
Sbjct: 250 DVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKG 309
Query: 363 FGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGYR 542
FGDR+LSE+KKLAPKD KI+ISAPQERLYSTWIGGSILASLDTF++MW+SK+E+E+DG R
Sbjct: 310 FGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSR 369
Query: 543 ALHRK 557
A+HRK
Sbjct: 370 AIHRK 374
>sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61163|ACTZ_HUMAN Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61162|ACTZ_CANFA Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
Length = 376
Score = 278 bits (710), Expect = 2e-74
Identities = 133/185 (71%), Positives = 160/185 (86%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKL 182
VSR+LRL LRKEG F +S+EFEIV+ +KE+AC+LS NP+ E E + Y LPDGS +
Sbjct: 190 VSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTI 249
Query: 183 RIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKG 362
IG ++FRAPELLFRPDLIG E +GIHEVL ++IQKSDMDLR+ L+ NIVLSGGSTLFKG
Sbjct: 250 EIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLFKG 309
Query: 363 FGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGYR 542
FGDR+LSE+KKLAPKD KIRISAPQERLYSTWIGGSILASLDTF++MW+SK+E+E+DG R
Sbjct: 310 FGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGAR 369
Query: 543 ALHRK 557
++HRK
Sbjct: 370 SIHRK 374
>sp|P45889|ACTZ_DROME Actin-like protein 87C
Length = 376
Score = 271 bits (693), Expect = 1e-72
Identities = 127/185 (68%), Positives = 160/185 (86%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTTYPLPDGSKL 182
V+RYL+ L+R+EG +F+++AEFEIVR +KEK C+L+ NP+ +E E + Y LPDG
Sbjct: 190 VTRYLKTLIRREGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIF 249
Query: 183 RIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKG 362
IG A+FRAPE+LFRPDL+G EC+GIH+VL YSI+KSDMDLR++LY NIVLSGGSTLFKG
Sbjct: 250 EIGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKG 309
Query: 363 FGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGYR 542
FGDR+LSELKK + KD KIRI+APQERLYSTW+GGSILASLDTF++MWISKRE+E++G +
Sbjct: 310 FGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQK 369
Query: 543 ALHRK 557
A+HRK
Sbjct: 370 AVHRK 374
>sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like protein)
Length = 385
Score = 210 bits (535), Expect = 3e-54
Identities = 108/196 (55%), Positives = 145/196 (73%), Gaps = 11/196 (5%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTT--------- 155
V+ YL+LLLRK GT F TSAE EIVR +KEK +++ +P +E+ I+ +
Sbjct: 189 VTEYLQLLLRKSGTIFHTSAEKEIVRIIKEKCSYVTLDPRKEEKEWINASISGGKDYTKE 248
Query: 156 --YPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNI 329
+ LPDG+ LR+G +FRAPE+LF P++IGSE GIH+V+ +I + D+DLR+ L+GNI
Sbjct: 249 EEFKLPDGNVLRLGAERFRAPEILFDPEIIGSEYSGIHQVVVDAISRVDLDLRKSLFGNI 308
Query: 330 VLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWI 509
VLSGGSTL +GFGDR+LSE+++LA KD KI+I AP ER YSTWIGGSILASL TFR+MW+
Sbjct: 309 VLSGGSTLTRGFGDRLLSEIRRLAVKDVKIKIFAPPERKYSTWIGGSILASLSTFRKMWV 368
Query: 510 SKREFEDDGYRALHRK 557
S E+++D +HRK
Sbjct: 369 SAEEYQEDP-DIIHRK 383
>sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin)
Length = 380
Score = 195 bits (495), Expect = 1e-49
Identities = 98/184 (53%), Positives = 137/184 (74%), Gaps = 7/184 (3%)
Frame = +3
Query: 3 VSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQ----SEIDNTT---YP 161
V+ YL+ LLRK G F TSAE E+VR +KE +++ +P +E+ +++D Y
Sbjct: 188 VTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAAAKMDPAKIAEYV 247
Query: 162 LPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSG 341
LPDG+KL+IG +FRAPE+LF P++IG E G+H+++ SI ++D+DLR+ LY NIVLSG
Sbjct: 248 LPDGNKLKIGAERFRAPEILFDPEIIGLEYPGVHQIVVDSINRTDLDLRRDLYSNIVLSG 307
Query: 342 GSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKRE 521
GSTL KGFGDR+L+E++KLA KD +I+I AP ER YSTWIGGSILA L TFR+MW+S +
Sbjct: 308 GSTLTKGFGDRLLTEVQKLAVKDMRIKIFAPPERKYSTWIGGSILAGLSTFRKMWVSIDD 367
Query: 522 FEDD 533
+ ++
Sbjct: 368 WHEN 371
>sp|Q8SWN8|ACT_ENCCU Actin
Length = 375
Score = 191 bits (484), Expect = 3e-48
Identities = 98/186 (52%), Positives = 128/186 (68%), Gaps = 4/186 (2%)
Frame = +3
Query: 12 YLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQ----EQSEIDNTTYPLPDGSK 179
YL+L+L + G F T+AE EIVR +KEK C++S N E E TY +PDG
Sbjct: 188 YLQLILTESGNSFTTTAEREIVRDIKEKLCYVSLNYEEDMRNTEHLASITKTYEMPDGQV 247
Query: 180 LRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFK 359
+ IG +FRAPELLF+P L G E GIH+ + SI K D+D+R+ LYGNIVLSGG+T++
Sbjct: 248 ISIGNERFRAPELLFQPKLRGLELKGIHQNIYDSIMKCDVDIRKELYGNIVLSGGTTMYP 307
Query: 360 GFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGY 539
G +RIL+E+K LAP KI + AP ER YS WIGGSILASL TF++MW+SK E+++ G
Sbjct: 308 GLAERILNEIKALAPPVIKIGVVAPPERKYSVWIGGSILASLSTFQQMWVSKAEYQEHGP 367
Query: 540 RALHRK 557
+HRK
Sbjct: 368 SIVHRK 373
>sp|P27131|ACT1_NAEFO Actin-1 (Actin I)
Length = 375
Score = 187 bits (476), Expect = 2e-47
Identities = 92/187 (49%), Positives = 129/187 (68%), Gaps = 5/187 (2%)
Frame = +3
Query: 12 YLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQ-----EQSEIDNTTYPLPDGS 176
YL +L + G F T+AE EIVR +KEK C+++ + E + E S ++ + Y LPDG+
Sbjct: 188 YLMKILMERGYSFNTTAEREIVRDIKEKLCYIALDFEQEMKIAAESSSVEKS-YELPDGN 246
Query: 177 KLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLF 356
+ +G +FR PE+LF+P+ IG E G+HE SI K D+D+R+ LYGN+VLSGG+T+F
Sbjct: 247 VITVGNERFRCPEVLFQPNFIGMEAAGVHETTFNSIGKCDIDIRKDLYGNVVLSGGTTMF 306
Query: 357 KGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDG 536
+G +R+ EL +AP KI++ AP ER YS WIGGSILASL TF++MWI+K E+ED G
Sbjct: 307 EGIAERMTKELTNMAPASMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKEEYEDAG 366
Query: 537 YRALHRK 557
+HRK
Sbjct: 367 PGIVHRK 373
>sp|P02578|ACT1_ACACA Actin-1
Length = 375
Score = 187 bits (475), Expect = 3e-47
Identities = 94/186 (50%), Positives = 125/186 (67%), Gaps = 4/186 (2%)
Frame = +3
Query: 12 YLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNT----TYPLPDGSK 179
YL +L + G F T+AE EIVR +KEK C+++ + E + + ++ +Y LPDG
Sbjct: 188 YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYELPDGQV 247
Query: 180 LRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFK 359
+ IG +FRAPE LF+P +G E GIHE SI K D+D+R+ LYGN+VLSGG+T+F
Sbjct: 248 ITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFP 307
Query: 360 GFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDDGY 539
G DR+ EL LAP KI+I AP ER YS WIGGSILASL TF++MWISK E+++ G
Sbjct: 308 GIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 367
Query: 540 RALHRK 557
+HRK
Sbjct: 368 SIVHRK 373
>sp|P53496|ACT11_ARATH Actin-11
Length = 377
Score = 187 bits (475), Expect = 3e-47
Identities = 96/188 (51%), Positives = 127/188 (67%), Gaps = 6/188 (3%)
Frame = +3
Query: 12 YLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDNTT------YPLPDG 173
YL +L + G F TSAE EIVR +KEK +++ + E ++ E NT+ Y LPDG
Sbjct: 190 YLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYE--QEMETANTSSSVEKSYELPDG 247
Query: 174 SKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTL 353
+ IGG +FR PE+LF+P L+G E GIHE SI K D+D+R+ LYGNIVLSGG+T+
Sbjct: 248 QVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTM 307
Query: 354 FKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRRMWISKREFEDD 533
F G DR+ E+ LAP KI++ AP ER YS WIGGSILASL TF++MWI+K E+++
Sbjct: 308 FPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDES 367
Query: 534 GYRALHRK 557
G +HRK
Sbjct: 368 GPSIVHRK 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,164,169
Number of Sequences: 369166
Number of extensions: 2143858
Number of successful extensions: 5742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5414
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)