Planarian EST Database


Dr_sW_010_L04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_010_L04
         (573 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5E9A1|NACA_BOVIN  Nascent polypeptide-associated complex...   166   5e-41
sp|Q13765|NACA_HUMAN  Nascent polypeptide-associated complex...   166   5e-41
sp|Q60817|NACA_MOUSE  Nascent polypeptide-associated complex...   166   5e-41
sp|Q68F90|NACA_XENTR  Nascent polypeptide-associated complex...   166   5e-41
sp|Q8AWF2|NACA_ORENI  Nascent polypeptide-associated complex...   166   5e-41
sp|P70670|NACAM_MOUSE  Nascent polypeptide-associated comple...   166   5e-41
sp|Q8JIU7|NACA_BRARE  Nascent polypeptide-associated complex...   164   1e-40
sp|Q6IP73|NACA_XENLA  Nascent polypeptide-associated complex...   164   2e-40
sp|Q5R9I9|NACA_PONPY  Nascent polypeptide-associated complex...   163   3e-40
sp|Q6QN10|NACA_CHILA  Nascent polypeptide-associated complex...   161   9e-40
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 215

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 109/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 174 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC) (Hom s 2.02)
          Length = 215

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 109/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 174 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
           (Alpha-NAC/1.9.2)
          Length = 215

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 109/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 174 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 214

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 109/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 60  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 119

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 120 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 172

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 173 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 215

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 110/161 (68%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 174 TGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
            form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score =  166 bits (419), Expect = 5e-41
 Identities = 92/161 (57%), Positives = 109/161 (67%)
 Frame = +1

Query: 49   DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
            ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 2033 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 2092

Query: 229  VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
            +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 2093 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 2145

Query: 409  TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
            TG+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 2146 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 215

 Score =  164 bits (415), Expect = 1e-40
 Identities = 91/161 (56%), Positives = 109/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ V GV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+L+M QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 174 TGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 213

 Score =  164 bits (414), Expect = 2e-40
 Identities = 91/161 (56%), Positives = 108/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 59  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 118

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 119 IVFGEAKIED-------LSQQAQLAAAEKFKVQGETVSNIQENTQTPTVQEESEEEEVDE 171

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
            G+   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 172 AGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 215

 Score =  163 bits (412), Expect = 3e-40
 Identities = 91/161 (56%), Positives = 108/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           T +   DI+L+M QA VSR KA+RALKN  ND+VNAIMELT
Sbjct: 174 TDVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
           (Alpha-NAC)
          Length = 215

 Score =  161 bits (408), Expect = 9e-40
 Identities = 90/161 (55%), Positives = 108/161 (67%)
 Frame = +1

Query: 49  DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 228
           ++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61  EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120

Query: 229 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 408
           +VFGEAKIED                                     T+QEES+ EE D 
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173

Query: 409 TGLCENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 531
           TG+   DI+ +M QA VSR KA+RALKN  N++VNAIMELT
Sbjct: 174 TGVEVKDIEWVMSQANVSRAKAVRALKNNSNNIVNAIMELT 214
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,725,879
Number of Sequences: 369166
Number of extensions: 847445
Number of successful extensions: 2587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2569
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)