Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K22
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18733|ZG66_XENLA Gastrula zinc finger protein XLCGF66.1 32 2.2
sp|Q14242|SELPL_HUMAN P-selectin glycoprotein ligand 1 prec... 31 3.7
sp|P38894|FLO5_YEAST Flocculation protein FLO5 precursor (F... 31 4.9
sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 (18-... 30 8.3
>sp|P18733|ZG66_XENLA Gastrula zinc finger protein XLCGF66.1
Length = 606
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 509 ATSSKFVGYPSLLPVSIKMMRNTICGSCMSLISPIIQLLQTTAAIYSLTISH-PRVF--- 676
ATSS+ + + + + +K T CG C S S +++ +T + + S + F
Sbjct: 394 ATSSQLIAHQQQVHIEVKPFSCTKCGKCFSYRSRLVRHQRTHTGVKPYSCSECGKCFASS 453
Query: 677 DHLLGHSDQ 703
HL+GH Q
Sbjct: 454 SHLIGHRQQ 462
>sp|Q14242|SELPL_HUMAN P-selectin glycoprotein ligand 1 precursor (PSGL-1) (Selectin P
ligand) (CD162 antigen)
Length = 412
Score = 31.2 bits (69), Expect = 3.7
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Frame = +2
Query: 299 KSSQRTTNKSLDTRPEENLFQLAMRSVSKSSQCMLASVKNYVHEPNPENKFIMESFTN-- 472
+++Q T ++ T PE Q + +++ LA+++ EP+ ME T
Sbjct: 222 QTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRG 281
Query: 473 -----SVSSSVKALAAMATSSKFVGYPSLLPVSIKMMRNTICGSCMSLISPIIQLLQTTA 637
SVSS MA S+ V YP P I + + + ++L++ I +
Sbjct: 282 LFIPFSVSSVTHKGIPMAASNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVL 341
Query: 638 AI 643
A+
Sbjct: 342 AV 343
>sp|P38894|FLO5_YEAST Flocculation protein FLO5 precursor (Flocculin-5)
Length = 1075
Score = 30.8 bits (68), Expect = 4.9
Identities = 36/171 (21%), Positives = 70/171 (40%)
Frame = +2
Query: 146 ILLRTSSSDCLTTQNEELQEVMLFSCKNFSSSLTYLAICCRTAAANVDISIKSSQRTTNK 325
I++RT +S+ L T E F+S+ T + T D ++ + T++
Sbjct: 535 IVIRTPTSEGLITTTTEPWT------GTFTSTSTEMTTVTGTNGQPTDETVIVIRTPTSE 588
Query: 326 SLDTRPEENLFQLAMRSVSKSSQCMLASVKNYVHEPNPENKFIMESFTNSVSSSVKALAA 505
L TR E S+ + ++ +P E ++ + T ++SSS+ + +
Sbjct: 589 GLITRTTE-----PWTGTFTSTSTEVTTITGTNGQPTDETVIVIRTPTTAISSSLSSSSG 643
Query: 506 MATSSKFVGYPSLLPVSIKMMRNTICGSCMSLISPIIQLLQTTAAIYSLTI 658
TSS P + P + I S +S S + L T+++ S ++
Sbjct: 644 QITSSITSSRPIITPFYPSNGTSVISSSVIS--SSVTSSLVTSSSFISSSV 692
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 (18-56 protein)
Length = 402
Score = 30.0 bits (66), Expect = 8.3
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +2
Query: 413 KNYVHEPNPENKFIMESFTNSVSSSVKALAAMATSSKFVGYPSLLPVSIK-----MMRNT 577
K + + +PE KF+++ N + V A +A ++ +LP + MM
Sbjct: 79 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 138
Query: 578 ICGSCMSLISPIIQLLQTTAAIYSLTISHPRVFDHL 685
+ S ++ + + ++ + L + HP +FD L
Sbjct: 139 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,199,100
Number of Sequences: 369166
Number of extensions: 1723243
Number of successful extensions: 3945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)