Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K09
(855 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPas... 289 6e-78
sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATP... 289 8e-78
sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATP... 288 2e-77
sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATP... 288 2e-77
sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPas... 288 2e-77
sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum AT... 285 9e-77
sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum AT... 282 7e-76
sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homo... 256 4e-68
sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog 256 6e-68
sp|Q9SCN8|CD48D_ARATH Putative cell division control protei... 254 2e-67
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 289 bits (740), Expect = 6e-78
Identities = 155/252 (61%), Positives = 179/252 (71%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQAAPCVLFFDELDSIAK INQ+LTEMDGMS KKNVFIIGATN
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID AILRPGRLDQLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSG
Sbjct: 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
ADLTEICQRACK AIRE IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FAR
Sbjct: 685 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 542 RSVTDNDVRKYEMFAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGNQQSNIPVSXXXX 721
RSV+DND+RKYEMFAQTL G N+ S+ S G N+
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSG--NQGGAGPSQGSGGGTGGNV------- 795
Query: 722 XXXFNEGEDDLY 757
+ +DDLY
Sbjct: 796 --YTEDNDDDLY 805
Score = 102 bits (253), Expect = 2e-21
Identities = 54/137 (39%), Positives = 81/137 (59%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DELD+IA ++QLLT MDG+ + +V ++ ATN
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATN 348
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ + I +PD R++IL+ + + +A DVD+ +A THG G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A QAIR+
Sbjct: 409 ADLAALCSEAALQAIRK 425
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit)
Length = 805
Score = 289 bits (739), Expect = 8e-78
Identities = 157/252 (62%), Positives = 176/252 (69%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQAAPCVLFFDELDSIAK INQ+LTEMDGMS KKNVFIIGATN
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATN 624
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID AILRPGRLDQLIYIPLPDEKSR+ ILKANLRKSP+AKDVDV+++AK+T+GFSG
Sbjct: 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSG 684
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
ADLTEICQRACK AIRE IE +I+ RD+Q+ ++ DPVPEI R HFEEAM+ AR
Sbjct: 685 ADLTEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLAR 744
Query: 542 RSVTDNDVRKYEMFAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGNQQSNIPVSXXXX 721
RSV+DND+RKYEMFAQTL G + A P AG
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFGSFRFPAGGQSGAG---PSPGAGGGSGG-------- 793
Query: 722 XXXFNEGEDDLY 757
F E +DDLY
Sbjct: 794 -GHFTEEDDDLY 804
Score = 101 bits (251), Expect = 3e-21
Identities = 53/137 (38%), Positives = 81/137 (59%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DELD+IA ++QLLT MDG+ + +V ++ ATN
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATN 348
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ + I +PD R++IL+ + + ++ DVD+ +A THG G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVG 408
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A QAIR+
Sbjct: 409 ADLAALCSEAALQAIRK 425
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 288 bits (736), Expect = 2e-77
Identities = 145/198 (73%), Positives = 164/198 (82%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQAAPCVLFFDELDSIAK INQ+LTEMDGMS KKNVFIIGATN
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID AILRPGRLDQLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSG
Sbjct: 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
ADLTEICQRACK AIRE IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FAR
Sbjct: 685 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 542 RSVTDNDVRKYEMFAQTL 595
RSV+DND+RKYEMFAQTL
Sbjct: 745 RSVSDNDIRKYEMFAQTL 762
Score = 102 bits (253), Expect = 2e-21
Identities = 54/137 (39%), Positives = 81/137 (59%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DELD+IA ++QLLT MDG+ + +V ++ ATN
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATN 348
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ + I +PD R++IL+ + + +A DVD+ +A THG G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A QAIR+
Sbjct: 409 ADLAALCSEAALQAIRK 425
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 288 bits (736), Expect = 2e-77
Identities = 145/198 (73%), Positives = 164/198 (82%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQAAPCVLFFDELDSIAK INQ+LTEMDGMS KKNVFIIGATN
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID AILRPGRLDQLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSG
Sbjct: 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
ADLTEICQRACK AIRE IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FAR
Sbjct: 685 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 542 RSVTDNDVRKYEMFAQTL 595
RSV+DND+RKYEMFAQTL
Sbjct: 745 RSVSDNDIRKYEMFAQTL 762
Score = 102 bits (253), Expect = 2e-21
Identities = 54/137 (39%), Positives = 81/137 (59%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DELD+IA ++QLLT MDG+ + +V ++ ATN
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATN 348
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ + I +PD R++IL+ + + +A DVD+ +A THG G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A QAIR+
Sbjct: 409 ADLAALCSEAALQAIRK 425
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 288 bits (736), Expect = 2e-77
Identities = 145/198 (73%), Positives = 164/198 (82%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQAAPCVLFFDELDSIAK INQ+LTEMDGMS KKNVFIIGATN
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID AILRPGRLDQLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSG
Sbjct: 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
ADLTEICQRACK AIRE IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FAR
Sbjct: 685 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 542 RSVTDNDVRKYEMFAQTL 595
RSV+DND+RKYEMFAQTL
Sbjct: 745 RSVSDNDIRKYEMFAQTL 762
Score = 102 bits (253), Expect = 2e-21
Identities = 54/137 (39%), Positives = 81/137 (59%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DELD+IA ++QLLT MDG+ + +V ++ ATN
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATN 348
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ + I +PD R++IL+ + + +A DVD+ +A THG G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A QAIR+
Sbjct: 409 ADLAALCSEAALQAIRK 425
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48
homolog 2)
Length = 810
Score = 285 bits (730), Expect = 9e-77
Identities = 158/257 (61%), Positives = 180/257 (70%), Gaps = 4/257 (1%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KAR AAPCVLFFDELDSIAK INQ+LTEMDGM+AKKNVFIIGATN
Sbjct: 570 KARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATN 629
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID A+LRPGRLDQLIYIPLPDE SR+QI KA+LRK+P++ D+D+N++AK T GFSG
Sbjct: 630 RPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSG 689
Query: 362 ADLTEICQRACKQAIRECIEADI---KAARDQQSKGGEPMEDDI-DPVPEITRKHFEEAM 529
ADLTEICQRACK AIRE IE +I K +D+ ++G E MED++ DPVPEITR HFEEAM
Sbjct: 690 ADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAM 749
Query: 530 KFARRSVTDNDVRKYEMFAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGNQQSNIPVS 709
KFARRSVTDND+RKYEMFAQTL PG A +P GN S
Sbjct: 750 KFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEAPSA----GQPVGGNGGSG---- 801
Query: 710 XXXXXXXFNEGEDDLYN 760
+DDLYN
Sbjct: 802 --------GNDDDDLYN 810
Score = 101 bits (252), Expect = 2e-21
Identities = 54/135 (40%), Positives = 79/135 (58%)
Frame = +2
Query: 17 APCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDII 196
+P +LF DE+D+IA ++QLLT MDG+ + +V +I ATNRP+ I
Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRI---VSQLLTLMDGLKTRAHVVVIAATNRPNSI 358
Query: 197 DAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTE 376
D A+ R GR D+ I I +PD R++IL+ + + + +DVD+ +A HGF GADL
Sbjct: 359 DGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLAS 418
Query: 377 ICQRACKQAIRECIE 421
+C A Q IRE +E
Sbjct: 419 LCSEAAIQQIREKME 433
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48
homolog 1)
Length = 809
Score = 282 bits (722), Expect = 7e-76
Identities = 159/258 (61%), Positives = 181/258 (70%), Gaps = 5/258 (1%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXX-INQLLTEMDGMSAKKNVFIIGAT 178
KAR AAPCVLFFDELDSIAK INQ+LTEMDGM+AKKNVFIIGAT
Sbjct: 571 KARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGAT 630
Query: 179 NRPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFS 358
NRPDIID A+LRPGRLDQLIYIPLPDE SR QILKA+LRK+P++KD+D+ ++AK T GFS
Sbjct: 631 NRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFS 690
Query: 359 GADLTEICQRACKQAIRECIEADI---KAARDQQSKGGEPMEDD-IDPVPEITRKHFEEA 526
GADLTEICQRACK AIRE IE +I K +D+Q++G E MEDD +DPVPEITR HFEEA
Sbjct: 691 GADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEA 750
Query: 527 MKFARRSVTDNDVRKYEMFAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGNQQSNIPV 706
MKFARRSVTDND+RKYEMFAQTL PG G+ + PV
Sbjct: 751 MKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEQR-----------GSDAPSAPV 799
Query: 707 SXXXXXXXFNEGEDDLYN 760
+ +DDLYN
Sbjct: 800 PA--------QDDDDLYN 809
Score = 103 bits (256), Expect = 8e-22
Identities = 55/134 (41%), Positives = 78/134 (58%)
Frame = +2
Query: 20 PCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIID 199
P +LF DE+D+IA ++QLLT MDG+ + N+ +I ATNRP+ ID
Sbjct: 304 PAILFIDEIDAIAPKREKTNGEVERRI---VSQLLTLMDGVKGRSNLVVIAATNRPNSID 360
Query: 200 AAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEI 379
A+ R GR D+ I I +PD R++IL+ + + +A DVD+ +A HGF GADL +
Sbjct: 361 GALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASL 420
Query: 380 CQRACKQAIRECIE 421
C A Q IRE +E
Sbjct: 421 CSEAALQQIREKME 434
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E (AtCDC48e) (Transitional
endoplasmic reticulum ATPase E)
Length = 810
Score = 256 bits (655), Expect = 4e-68
Identities = 136/200 (68%), Positives = 156/200 (78%), Gaps = 2/200 (1%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQ+APCVLFFDELDSIA +NQLLTEMDGM+AKK VFIIGATN
Sbjct: 568 KARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 627
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID+A+LRPGRLDQLIYIPLPDE SR+ I KA LRKSP+AKDVDV +AK T GFSG
Sbjct: 628 RPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSG 687
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDI--DPVPEITRKHFEEAMKF 535
AD+TEICQRACK AIRE IE DI+ R ++S+ E ME+D+ D V EI HFEE+MK+
Sbjct: 688 ADITEICQRACKYAIRENIEKDIENER-RRSQNPEAMEEDMVDDEVSEIRAAHFEESMKY 746
Query: 536 ARRSVTDNDVRKYEMFAQTL 595
ARRSV+D D+RKY+ FAQTL
Sbjct: 747 ARRSVSDADIRKYQAFAQTL 766
Score = 108 bits (270), Expect = 2e-23
Identities = 56/137 (40%), Positives = 86/137 (62%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DE+DSIA ++QLLT MDG+ ++ +V ++GATN
Sbjct: 295 EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRI---VSQLLTLMDGLKSRAHVIVMGATN 351
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ I I +PDE R+++L+ + + +A+DVD+ ++K THG+ G
Sbjct: 352 RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVG 411
Query: 362 ADLTEICQRACKQAIRE 412
ADL +C A Q IRE
Sbjct: 412 ADLAALCTEAALQCIRE 428
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog
Length = 805
Score = 256 bits (654), Expect = 6e-68
Identities = 132/198 (66%), Positives = 155/198 (78%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQ+APCVLFFDELDSIA +NQLLTEMDGM+AKK VFIIGATN
Sbjct: 569 KARQSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 628
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID A+LRPGRLDQLIYIPLPDE SR QI KA LRKSP++KD+D+ +AK T GFSG
Sbjct: 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSG 688
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
AD+TEICQRACK AIRE IE DI+ + +Q + + M++D+D VPEI HFEE+MK+AR
Sbjct: 689 ADVTEICQRACKYAIRENIEKDIEREKRRQ-ENPDSMDEDVDEVPEIKPAHFEESMKYAR 747
Query: 542 RSVTDNDVRKYEMFAQTL 595
RSV+D D+RKY+ FAQTL
Sbjct: 748 RSVSDADIRKYQAFAQTL 765
Score = 108 bits (269), Expect = 2e-23
Identities = 61/176 (34%), Positives = 102/176 (57%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DE+DSIA ++QLLT MDG+ ++ +V ++GATN
Sbjct: 296 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATN 352
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ I I +PDE R+++L + + +A++VD+ ++K THG+ G
Sbjct: 353 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVG 412
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 529
ADL +C A Q IRE + D+ D + ++ ++ +T +HF+ A+
Sbjct: 413 ADLAALCTEAALQCIRE--KMDVLDLED------DTIDAEVLNSMAVTNEHFQTAL 460
>sp|Q9SCN8|CD48D_ARATH Putative cell division control protein 48 homolog D (AtCDC48d)
(Transitional endoplasmic reticulum ATPase D)
Length = 815
Score = 254 bits (649), Expect = 2e-67
Identities = 131/198 (66%), Positives = 155/198 (78%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
KARQ+APCVLFFDELDSIA +NQLLTEMDGM+AKK VFIIGATN
Sbjct: 569 KARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 628
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RPDIID A+LRPGRLDQLIYIPLPDE+SR QI K+ LRKSP+AKDVD+ +AK T GFSG
Sbjct: 629 RPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSG 688
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFAR 541
AD+TEICQR+CK AIRE IE DI+ R ++++ E ME+D + + EI HFEE+MK+AR
Sbjct: 689 ADITEICQRSCKYAIRENIEKDIEKER-KRAESPEAMEEDEEEIAEIKAGHFEESMKYAR 747
Query: 542 RSVTDNDVRKYEMFAQTL 595
RSV+D D+RKY+ FAQTL
Sbjct: 748 RSVSDADIRKYQAFAQTL 765
Score = 108 bits (271), Expect = 1e-23
Identities = 63/176 (35%), Positives = 102/176 (57%)
Frame = +2
Query: 2 KARQAAPCVLFFDELDSIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATN 181
+A + AP ++F DE+DSIA ++QLLT MDG+ ++ +V ++GATN
Sbjct: 296 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATN 352
Query: 182 RPDIIDAAILRPGRLDQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSG 361
RP+ ID A+ R GR D+ I I +PDE R+++L+ + + +A+DVD+ ++K THG+ G
Sbjct: 353 RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVG 412
Query: 362 ADLTEICQRACKQAIRECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 529
ADL +C A Q IRE + D+ D E ++ +I ++ HF+ A+
Sbjct: 413 ADLAALCTEAALQCIRE--KMDVIDLDD------EEIDAEILNSMAVSNDHFQTAL 460
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,415,383
Number of Sequences: 369166
Number of extensions: 1737569
Number of successful extensions: 4797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4489
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)