Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K07
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13387|EGFR_CHICK Epidermal growth factor receptor precu... 31 1.0
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Kerat... 30 1.7
sp|Q6GUQ1|EGFL8_MOUSE Multiple EGF-like-domain protein 8 pr... 28 6.6
sp|P53308|YG4U_YEAST Hypothetical 11.9 kDa protein in DIE2-... 28 6.6
sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 (Kera... 28 6.6
sp|P32645|ISC10_YEAST Meiosis-specific protein ISC10 28 8.6
sp|Q3I5J6|R1AB_BSCR3 Replicase polyprotein 1ab (pp1ab) (ORF... 28 8.6
sp|P11046|LAMB1_DROME Laminin beta-1 chain precursor (Lamin... 28 8.6
>sp|P13387|EGFR_CHICK Epidermal growth factor receptor precursor (CER)
Length = 703
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 CGALHCDSCGRQIC-VFTKKIAGNNGPDTC-GCTPTKTCHPDCKYGC 135
C HC G Q C TK I C G P+ CH C GC
Sbjct: 201 CTEDHCWGAGEQNCQTLTKVICAQQCSGRCRGKVPSDCCHNQCAAGC 247
>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
(Ultrahigh sulfur keratin-associated protein 5.9)
(Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
Length = 169
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 ALHCDSCGRQICVFTKKIAGNNGPDTCGCTPTKTCHP-DCKYGC 135
A C SCG++ C G G +CGC+ C P C GC
Sbjct: 51 ACSCSSCGKRGCGSCGGSKGGCG--SCGCSQCSCCKPCCCSSGC 92
>sp|Q6GUQ1|EGFL8_MOUSE Multiple EGF-like-domain protein 8 precursor
Length = 293
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Frame = +1
Query: 4 GALHCDSCGRQICVFTKKIAGNNGPDTCGCTP---TKTCHPD----------CKYGC 135
GAL CD+ + C+ G PD C C P K CH D C +GC
Sbjct: 106 GALTCDAICSKPCLNGGVCTG---PDRCECAPGWGGKHCHVDVDECRASLTLCSHGC 159
>sp|P53308|YG4U_YEAST Hypothetical 11.9 kDa protein in DIE2-SMI1 intergenic region
Length = 114
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 174 STINLSSVILFWKASIFTVRVTC-FCGSAATGIWAIISGYFFCENTNLSTTTVTMQCS 4
S + +SSV LF +S F VTC F + + + S F + +ST + + CS
Sbjct: 31 SFLFISSVCLFTSSSFFADSVTCSFSTCSFSSTFGCFSSSFLSLSCLMSTLSALISCS 88
>sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 (Keratin-associated protein 5.11)
(Ultrahigh sulfur keratin-associated protein 5.11)
Length = 156
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 CGALHCDSCGRQICVFTKKIAGNNGPDTCGCTPTKTCHPDC-KYGC 135
C C SCG + G +CGC+ + C P C GC
Sbjct: 52 CSCSSCGSCGGSKGGCGSCGSSKGGCGSCGCSQSNCCKPCCSSSGC 97
>sp|P32645|ISC10_YEAST Meiosis-specific protein ISC10
Length = 267
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 133 IHIYSQGDMFLWECSHRY-LGHYFRLF 56
IH+ S D+ L EC H Y ++RLF
Sbjct: 118 IHLQSDSDIILEECEHNYDCSPFYRLF 144
>sp|Q3I5J6|R1AB_BSCR3 Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase
polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader
protein; p65 homolog; NSP1 (Papain-like proteinase)
(PL-PRO); 3C-like proteinase (3CL-PRO) (3CLp) (NSP2);
NSP3; NSP4; NSP5; NSP6; Growth factor-like peptide (GFL)
(NSP7); RNA-directed RNA polymerase (RdRp) (Pol) (NSP9);
Helicase (Hel) (NSP10); NSP11; NSP12; NSP13]
Length = 7071
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Frame = +1
Query: 13 HCDSCGRQICVFTKKIAG--------NNGPDTCGCTPT 102
HCD Q C F K + GP+TCG PT
Sbjct: 325 HCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYLPT 362
>sp|P11046|LAMB1_DROME Laminin beta-1 chain precursor (Laminin B1 chain)
Length = 1790
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +1
Query: 10 LHCDSCGRQICVFTKKIAGNNGPDTCGCTPTKTCHPDC 123
+ CD C KIA G ++C C P H C
Sbjct: 1075 VRCDQCAENHW----KIASGEGCESCNCDPIGALHEQC 1108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,766,426
Number of Sequences: 369166
Number of extensions: 531864
Number of successful extensions: 1299
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)