Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_J21
(611 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 369 e-102
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 369 e-102
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 369 e-102
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 369 e-102
sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) 369 e-102
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 367 e-101
sp|P02554|TBB_PIG Tubulin beta chain 367 e-101
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 367 e-101
sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin) 366 e-101
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 366 e-101
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 369 bits (946), Expect = e-102
Identities = 181/203 (89%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 369 bits (946), Expect = e-102
Identities = 181/203 (89%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 369 bits (946), Expect = e-102
Identities = 181/203 (89%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 369 bits (946), Expect = e-102
Identities = 181/203 (89%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin)
Length = 341
Score = 369 bits (946), Expect = e-102
Identities = 181/203 (89%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 17 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 76
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 77 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 136
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 137 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 196
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 197 APLTSRGSQQYRALTVPELTQQM 219
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 367 bits (943), Expect = e-101
Identities = 180/203 (88%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVP+LTQQM
Sbjct: 271 APLTSRGSQQYRALTVPDLTQQM 293
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 367 bits (943), Expect = e-101
Identities = 180/203 (88%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 367 bits (942), Expect = e-101
Identities = 180/203 (88%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQ+
Sbjct: 271 APLTSRGSQQYRALTVPELTQQV 293
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
Length = 443
Score = 366 bits (940), Expect = e-101
Identities = 179/203 (88%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 366 bits (940), Expect = e-101
Identities = 179/203 (88%), Positives = 184/203 (90%)
Frame = +3
Query: 3 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXX 182
+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL 150
Query: 183 XXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDI 362
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 363 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 542
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
Sbjct: 211 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 270
Query: 543 APLTSRGSQQYRAMTVPELTQQM 611
APLTSRGSQQYRA+TVPELTQQM
Sbjct: 271 APLTSRGSQQYRALTVPELTQQM 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,876,010
Number of Sequences: 369166
Number of extensions: 1299221
Number of successful extensions: 4064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3696
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)